Rroxscaffold_7G00182420
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0030415
Physical Location & Seq
Reverse (-)
21431729 .. 21433059
1331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00182420.1

Sequence Viewer

Length: 525 bp
ATGAGGTTGAAGAAACGAATCGATAGAGTTGGGATTTGTCTTCCTACAATTGAAGTTAGATTCGAGCATTTAAAAATTGCAGCTGAATCATATGTAGGACGCAGAGCTCAGCCTACAGTCCTCAATTACTGTGTTAATTTCGTGGAGAATGACACTGCTTTTGGGTCCTCCAAGTTCGGGAAGACCACGTTCTTGTTAGCTTTGGCTGGAGAGCTTGATAAGGATGTTAAGGTTTCAGGAAATGTGACTTACAATGGTCATGGCATGCACGAATTTGTAGCGCAGAGAAGTGCTGCATATATCAGTCAACATGATGTTCATATTGGAGAAATGACAGTTGGAGAGACCTTGGCTTTTTCGGCAAGATGCCAAGGGGCTGCAACTCTTGATGGTTCATTTATGGGACTGCATTTAAATGCTAGAACAGGAATAGCACCAGAAAGCCAGAGGGCAGCATTTGAGACAACTTATATTCTTAAGATTTTGGGTTTGGATGGCTGTGCAGATACCTTGTGTGAGACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

174

Amino Acids

18.98

Weight (kDa)

6.58

Isoelectric Point (pI)

23.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030415)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0286351
rosa_roxburghii Rroxscaffold_7G00182420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 177
AflII CTTAAG 1 cut(s) 476
AgsI TTSAA 2 cut(s) 10, 53
AjuI GAANNNNNNNTTGG 2 cut(s) 321, 353
AluBI AGCT 4 cut(s) 83, 107, 200, 214
AluI AGCT 4 cut(s) 83, 107, 200, 214
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 3 cut(s) 338, 455, 512
ApeKI GCWGC 4 cut(s) 80, 293, 377, 452
ApoI RAATTY 1 cut(s) 272
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 1 cut(s) 165
AvaII GGWCC 1 cut(s) 165
BanII GRGCYC 1 cut(s) 109
BbsI GAAGAC 2 cut(s) 32, 188
Bbv12I GWGCWC 1 cut(s) 109
BbvI GCAGC 4 cut(s) 92, 280, 364, 464
BccI CCATC 2 cut(s) 383, 488
BcoDI GTCTC 3 cut(s) 338, 455, 512
BfaI CTAG 1 cut(s) 420
BfmI CTRYAG 1 cut(s) 114
BfrI CTTAAG 1 cut(s) 476
BisI GCNGC 4 cut(s) 81, 294, 378, 453
BlpI GCTNAGC 1 cut(s) 108
BlsI GCNGC 4 cut(s) 82, 295, 379, 454
Bme18I GGWCC 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 165
BmiI GGNNCC 1 cut(s) 166
BmsI GCATC 1 cut(s) 356
BpiI GAAGAC 2 cut(s) 32, 188
BpmI CTGGAG 1 cut(s) 228
Bpu1102I GCTNAGC 1 cut(s) 108
Bsa29I ATCGAT 1 cut(s) 21
BsaI GGTCTC 2 cut(s) 338, 512
BsaJI CCNNGG 2 cut(s) 348, 370
Bsc4I CCNNNNNNNGG 1 cut(s) 177
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 348, 370
BseGI GGATG 2 cut(s) 229, 499
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMII CTCAG 1 cut(s) 122
BseXI GCAGC 4 cut(s) 92, 280, 364, 464
BsgI GTGCAG 1 cut(s) 522
BshVI ATCGAT 1 cut(s) 21
BsiHKAI GWGCWC 1 cut(s) 109
BslFI GGGAC 1 cut(s) 417
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 3 cut(s) 338, 455, 512
BsmFI GGGAC 1 cut(s) 417
Bso31I GGTCTC 2 cut(s) 338, 512
Bsp1286I GDGCHC 1 cut(s) 109
Bsp1720I GCTNAGC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 121
BspDI ATCGAT 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 166
BspTI CTTAAG 1 cut(s) 476
BspTNI GGTCTC 2 cut(s) 338, 512
BssECI CCNNGG 2 cut(s) 348, 370
BssT1I CCWWGG 2 cut(s) 348, 370
Bst4CI ACNGT 3 cut(s) 118, 131, 337
BstAFI CTTAAG 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 266
BstDEI CTNAG 1 cut(s) 108
BstF5I GGATG 2 cut(s) 229, 499
BstHHI GCGC 1 cut(s) 283
BstMAI GTCTC 3 cut(s) 338, 455, 512
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNSI RCATGY 1 cut(s) 268
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 4 cut(s) 92, 280, 364, 464
BstV2I GAAGAC 2 cut(s) 32, 188
Bsu15I ATCGAT 1 cut(s) 21
BsuTUI ATCGAT 1 cut(s) 21
BtsCI GGATG 2 cut(s) 229, 499
BtsI GCAGTG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 266
CfoI GCGC 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 165
ClaI ATCGAT 1 cut(s) 21
CseI GACGC 1 cut(s) 108
CviAII CATG 3 cut(s) 260, 265, 311
DdeI CTNAG 1 cut(s) 108
DraI TTTAAA 2 cut(s) 72, 414
Ecl136II GAGCTC 1 cut(s) 107
Eco130I CCWWGG 2 cut(s) 348, 370
Eco24I GRGCYC 1 cut(s) 109
Eco31I GGTCTC 2 cut(s) 338, 512
Eco47I GGWCC 1 cut(s) 165
Eco53kI GAGCTC 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 107
EcoO109I RGGNCCY 1 cut(s) 165
EcoT14I CCWWGG 2 cut(s) 348, 370
EcoT38I GRGCYC 1 cut(s) 109
ErhI CCWWGG 2 cut(s) 348, 370
FaeI CATG 3 cut(s) 263, 268, 314
FaqI GGGAC 1 cut(s) 417
FatI CATG 3 cut(s) 259, 264, 310
FauNDI CATATG 1 cut(s) 91
Fnu4HI GCNGC 4 cut(s) 81, 294, 378, 453
FokI GGATG 2 cut(s) 236, 506
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 4 cut(s) 81, 294, 378, 453
FspBI CTAG 1 cut(s) 420
GlaI GCGC 1 cut(s) 282
GluI GCNGC 4 cut(s) 81, 294, 378, 453
GsuI CTGGAG 1 cut(s) 228
HgaI GACGC 1 cut(s) 108
HhaI GCGC 1 cut(s) 283
Hin1II CATG 3 cut(s) 263, 268, 314
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HincII GTYRAC 1 cut(s) 308
HindII GTYRAC 1 cut(s) 308
HinfI GANTC 3 cut(s) 18, 60, 86
Hpy166II GTNNAC 1 cut(s) 308
Hpy188III TCNNGA 3 cut(s) 178, 237, 386
Hpy8I GTNNAC 1 cut(s) 308
HpyCH4III ACNGT 3 cut(s) 118, 131, 337
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 6 cut(s) 80, 268, 296, 380, 409, 503
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 1 cut(s) 108
HpySE526I ACGT 1 cut(s) 188
Hsp92II CATG 3 cut(s) 263, 268, 314
HspAI GCGC 1 cut(s) 281
LpnPI CCDG 5 cut(s) 192, 222, 411, 450, 458
Lsp1109I GCAGC 4 cut(s) 92, 280, 364, 464
LweI GCATC 1 cut(s) 356
MaeI CTAG 1 cut(s) 420
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 1 cut(s) 244
MboII GAAGA 3 cut(s) 22, 32, 193
MfeI CAATTG 1 cut(s) 48
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 5 cut(s) 48, 75, 124, 136, 272
MmeI TCCRAC 1 cut(s) 319
MnlI CCTC 3 cut(s) 131, 178, 441
MseI TTAA 5 cut(s) 71, 135, 228, 413, 477
MslI CAYNNNNRTG 1 cut(s) 414
MspA1I CMGCKG 1 cut(s) 83
MspCI CTTAAG 1 cut(s) 476
MunI CAATTG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 359
NdeI CATATG 1 cut(s) 91
NlaIII CATG 3 cut(s) 263, 268, 314
NlaIV GGNNCC 1 cut(s) 166
NmuCI GTSAC 1 cut(s) 244
NspI RCATGY 1 cut(s) 268
PaeI GCATGC 1 cut(s) 268
PfeI GAWTC 3 cut(s) 18, 60, 86
PkrI GCNGC 4 cut(s) 82, 295, 379, 454
PpuMI RGGWCCY 1 cut(s) 165
Psp124BI GAGCTC 1 cut(s) 109
Psp5II RGGWCCY 1 cut(s) 165
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 1 cut(s) 165
PspPPI RGGWCCY 1 cut(s) 165
PvuII CAGCTG 1 cut(s) 83
RseI CAYNNNNRTG 1 cut(s) 414
SacI GAGCTC 1 cut(s) 109
SaqAI TTAA 5 cut(s) 71, 135, 228, 413, 477
SatI GCNGC 4 cut(s) 81, 294, 378, 453
Sau96I GGNCC 1 cut(s) 165
SduI GDGCHC 1 cut(s) 109
SfaNI GCATC 1 cut(s) 356
SfcI CTRYAG 1 cut(s) 114
SinI GGWCC 1 cut(s) 165
SmiI ATTTAAAT 1 cut(s) 414
SmiMI CAYNNNNRTG 1 cut(s) 414
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
SphI GCATGC 1 cut(s) 268
Sse9I AATT 5 cut(s) 48, 75, 124, 136, 272
SspMI CTAG 1 cut(s) 420
SstI GAGCTC 1 cut(s) 109
StyI CCWWGG 2 cut(s) 348, 370
SwaI ATTTAAAT 1 cut(s) 414
TaaI ACNGT 3 cut(s) 118, 131, 337
TaiI ACGT 1 cut(s) 191
TaqI TCGA 2 cut(s) 21, 63
TasI AATT 5 cut(s) 48, 75, 124, 136, 272
TfiI GAWTC 3 cut(s) 18, 60, 86
Tru1I TTAA 5 cut(s) 71, 135, 228, 413, 477
Tru9I TTAA 5 cut(s) 71, 135, 228, 413, 477
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 4 cut(s) 80, 293, 377, 452
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 2 cut(s) 308, 384
TspRI CASTG 1 cut(s) 160
Vha464I CTTAAG 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 165
XapI RAATTY 1 cut(s) 272
XceI RCATGY 1 cut(s) 268
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.