RchiOBHm_Chr6g0292131

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
55088027 .. 55088975
949 bp
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UTR
Exon/CDS
Intron
PRQ26214

Sequence Viewer

Length: 375 bp
ATGGTGCGAGAAGGAAGGGCGCTGGATGTCATTGAAGATATGCCAGAGAAGGATCCACCTGAAGTTTTAGAGAAGTATGTATTGGTTGCTGTTCTTTGTTCTCATCCACAGTTGTATGCTAGGCCAACAATGGATCAGGTTGTAAAAATGTTGGAAACAGACTTGTCAGTTCCCTCAATCCCGGAAAGACCAATTCCCCTTGTGGCCGAGATTGATGATATAGAAAGATACTGTAGCTGTGACTCCATTCAGCTCTCAGTACAGGAGGCTTCCAGACTTACACATTTGAAAGTAGCCTTCCTCGTGACCATAAGGGAGATGGAGAAAGTTCAGGCGGTTCAACAACAGAAGGGAGGTGACTCTGGCAAGAGATAA

Protein Analysis

124

Amino Acids

13.99

Weight (kDa)

4.92

Isoelectric Point (pI)

52.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021448)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0292131
rosa_laevigata RLG00000012059
rosa_multiflora Rmu_sc0000502.1_g000010
rosa_samantha Rh6AG337000 Rh6CG351000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 335
AclWI GGATC 3 cut(s) 47, 60, 141
AcoI YGGCCR 1 cut(s) 204
AcuI CTGAAG 1 cut(s) 81
AfaI GTAC 1 cut(s) 261
AgsI TTSAA 3 cut(s) 35, 289, 341
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
AluBI AGCT 2 cut(s) 237, 253
AluI AGCT 2 cut(s) 237, 253
AlwI GGATC 3 cut(s) 47, 60, 141
AoxI GGCC 2 cut(s) 122, 204
AspLEI GCGC 1 cut(s) 22
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 368
BamHI GGATCC 1 cut(s) 52
BauI CACGAG 1 cut(s) 302
BccI CCATC 1 cut(s) 313
BcnI CCSGG 1 cut(s) 182
BfaI CTAG 1 cut(s) 120
BfmI CTRYAG 1 cut(s) 232
BfoI RGCGCY 1 cut(s) 23
Bme1390I CCNGG 1 cut(s) 182
BmiI GGNNCC 1 cut(s) 54
BmrFI CCNGG 1 cut(s) 182
BpuMI CCSGG 1 cut(s) 182
BseGI GGATG 2 cut(s) 31, 103
BseMII CTCAG 1 cut(s) 270
BshFI GGCC 2 cut(s) 124, 206
BsiSI CCGG 1 cut(s) 182
BsnI GGCC 2 cut(s) 124, 206
Bsp143I GATC 2 cut(s) 52, 133
BspACI CCGC 1 cut(s) 335
BspANI GGCC 2 cut(s) 124, 206
BspCNI CTCAG 1 cut(s) 269
BspLI GGNNCC 1 cut(s) 54
BspPI GGATC 3 cut(s) 47, 60, 141
BssMI GATC 2 cut(s) 52, 133
BssSI CACGAG 1 cut(s) 302
Bst2BI CACGAG 1 cut(s) 302
Bst4CI ACNGT 2 cut(s) 111, 233
BstDEI CTNAG 1 cut(s) 256
BstF5I GGATG 2 cut(s) 31, 103
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 2 cut(s) 55, 136
BstMBI GATC 2 cut(s) 52, 133
BstSCI CCNGG 1 cut(s) 180
BstSFI CTRYAG 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 2 cut(s) 124, 206
BtsCI GGATG 2 cut(s) 31, 103
CfoI GCGC 1 cut(s) 22
Csp6I GTAC 1 cut(s) 260
CviJI RGCY 6 cut(s) 124, 206, 237, 253, 269, 296
CviKI_1 RGCY 6 cut(s) 124, 206, 237, 253, 269, 296
CviQI GTAC 1 cut(s) 260
DdeI CTNAG 1 cut(s) 256
DpnI GATC 2 cut(s) 54, 135
DpnII GATC 2 cut(s) 52, 133
EaeI YGGCCR 1 cut(s) 204
Eco57I CTGAAG 1 cut(s) 81
FaiI YATR 5 cut(s) 41, 78, 117, 221, 311
FokI GGATG 2 cut(s) 38, 90
FspBI CTAG 1 cut(s) 120
GlaI GCGC 1 cut(s) 21
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 2 cut(s) 124, 206
HapII CCGG 1 cut(s) 182
HhaI GCGC 1 cut(s) 22
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HinfI GANTC 2 cut(s) 242, 359
HpaII CCGG 1 cut(s) 182
HphI GGTGA 1 cut(s) 368
Hpy188III TCNNGA 2 cut(s) 273, 304
HpyAV CCTTC 5 cut(s) 5, 9, 43, 307, 343
HpyCH4III ACNGT 2 cut(s) 111, 233
HpyF3I CTNAG 1 cut(s) 256
HspAI GCGC 1 cut(s) 20
Kzo9I GATC 2 cut(s) 52, 133
LpnPI CCDG 9 cut(s) 8, 57, 72, 122, 195, 248, 286, 317, 348
MaeI CTAG 1 cut(s) 120
MaeIII GTNAC 3 cut(s) 239, 304, 356
MalI GATC 2 cut(s) 54, 135
MboI GATC 2 cut(s) 52, 133
MboII GAAGA 1 cut(s) 47
MflI RGATCY 1 cut(s) 52
MluCI AATT 1 cut(s) 192
MlyI GAGTC 2 cut(s) 236, 353
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 4 cut(s) 184, 259, 311, 347
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 1 cut(s) 182
NciI CCSGG 1 cut(s) 182
NdeII GATC 2 cut(s) 52, 133
NlaIV GGNNCC 1 cut(s) 54
NmeAIII GCCGAG 1 cut(s) 232
NmuCI GTSAC 3 cut(s) 239, 304, 356
PfoI TCCNGGA 1 cut(s) 180
PleI GAGTC 2 cut(s) 236, 353
PpsI GAGTC 2 cut(s) 236, 353
PspN4I GGNNCC 1 cut(s) 54
PsuI RGATCY 1 cut(s) 52
RsaI GTAC 1 cut(s) 261
RsaNI GTAC 1 cut(s) 260
Sau3AI GATC 2 cut(s) 52, 133
SchI GAGTC 2 cut(s) 236, 353
ScrFI CCNGG 1 cut(s) 182
SetI ASST 5 cut(s) 61, 141, 239, 255, 358
SfcI CTRYAG 1 cut(s) 232
Sse9I AATT 1 cut(s) 192
SsiI CCGC 1 cut(s) 335
SspMI CTAG 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 180
TaaI ACNGT 2 cut(s) 111, 233
TasI AATT 1 cut(s) 192
TatI WGTACW 1 cut(s) 259
TseFI GTSAC 3 cut(s) 239, 304, 356
Tsp45I GTSAC 3 cut(s) 239, 304, 356
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.