Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000502.1

Orthogroup ID

OG0021448

Physical Location & Seq

Genomic Coordinates Forward (+)

36992 .. 37415

Gene Structure 424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000502.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

atgataatcagccgtcgatcacttgtgacggatttggcatggtccatggtgcgagaaggaaaggcgctggatgtcattgaagatatgccagagaaggatccacctgaagttttagagaagccaacaatggatcaggttgtaaaaatgttggaaacagacttgtcagttccctcaatcccggaaggaccaattccccttgtggccgagattgatgatatagaaagatattgtagctgtgactccattcagctctcagtacaggaggcttccagacttacacatttgaaagtagccttcctcgtgaccataagggagatggagaaagttcaggcggttcaacaacagaagggaggtgactctggcaagagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

123

Amino Acids

13.78

Weight (kDa)

4.72

Isoelectric Point (pI)

54.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021448)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0292131
rosa_laevigata	RLG00000012059
rosa_multiflora	Rmu_sc0000502.1_g000010
rosa_samantha	Rh6AG337000 Rh6CG351000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	332
AclWI	GGATC	3 cut(s)	92, 105, 138
AcoI	YGGCCR	1 cut(s)	201
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	1 cut(s)	258
AgsI	TTSAA	3 cut(s)	80, 286, 338
AluBI	AGCT	2 cut(s)	234, 250
AluI	AGCT	2 cut(s)	234, 250
AlwI	GGATC	3 cut(s)	92, 105, 138
AoxI	GGCC	1 cut(s)	201
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	2 cut(s)	42, 185
AsuC2I	CCSGG	1 cut(s)	179
AsuHPI	GGTGA	1 cut(s)	365
AvaII	GGWCC	2 cut(s)	42, 185
BamHI	GGATCC	1 cut(s)	97
BauI	CACGAG	1 cut(s)	299
BccI	CCATC	1 cut(s)	310
BcnI	CCSGG	1 cut(s)	179
BfoI	RGCGCY	1 cut(s)	68
Bme1390I	CCNGG	1 cut(s)	179
Bme18I	GGWCC	2 cut(s)	42, 185
BmgT120I	GGNCC	2 cut(s)	42, 185
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	179
BsaJI	CCNNGG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	45
BseGI	GGATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	267
BshFI	GGCC	1 cut(s)	203
BsiSI	CCGG	1 cut(s)	179
BsnI	GGCC	1 cut(s)	203
Bsp143I	GATC	3 cut(s)	17, 97, 130
Bsp19I	CCATGG	1 cut(s)	45
BspACI	CCGC	1 cut(s)	332
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	1 cut(s)	266
BspLI	GGNNCC	1 cut(s)	99
BspPI	GGATC	3 cut(s)	92, 105, 138
BssECI	CCNNGG	1 cut(s)	45
BssMI	GATC	3 cut(s)	17, 97, 130
BssSI	CACGAG	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	253
BstDSI	CCRYGG	1 cut(s)	45
BstF5I	GGATG	1 cut(s)	76
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	3 cut(s)	20, 100, 133
BstMBI	GATC	3 cut(s)	17, 97, 130
BstSCI	CCNGG	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	76
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	2 cut(s)	42, 185
Csp6I	GTAC	1 cut(s)	257
CviAII	CATG	2 cut(s)	39, 46
CviJI	RGCY	7 cut(s)	12, 121, 203, 234, 250, 266, 293
CviKI_1	RGCY	7 cut(s)	12, 121, 203, 234, 250, 266, 293
CviQI	GTAC	1 cut(s)	257
DdeI	CTNAG	1 cut(s)	253
DpnI	GATC	3 cut(s)	19, 99, 132
DpnII	GATC	3 cut(s)	17, 97, 130
EaeI	YGGCCR	1 cut(s)	201
Eco130I	CCWWGG	1 cut(s)	45
Eco47I	GGWCC	2 cut(s)	42, 185
Eco57I	CTGAAG	1 cut(s)	126
EcoT14I	CCWWGG	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	45
FaeI	CATG	2 cut(s)	42, 49
FaiI	YATR	5 cut(s)	40, 47, 86, 218, 308
FatI	CATG	2 cut(s)	38, 45
FokI	GGATG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	66
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	1 cut(s)	179
HhaI	GCGC	1 cut(s)	67
Hin1II	CATG	2 cut(s)	42, 49
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HinfI	GANTC	2 cut(s)	239, 356
HpaII	CCGG	1 cut(s)	179
HphI	GGTGA	1 cut(s)	365
Hpy188III	TCNNGA	2 cut(s)	270, 301
Hpy99I	CGWCG	1 cut(s)	18
HpyAV	CCTTC	5 cut(s)	50, 88, 176, 304, 340
HpyF3I	CTNAG	1 cut(s)	253
Hsp92II	CATG	2 cut(s)	42, 49
HspAI	GCGC	1 cut(s)	65
Kzo9I	GATC	3 cut(s)	17, 97, 130
LpnPI	CCDG	9 cut(s)	53, 102, 117, 119, 192, 245, 283, 314, 345
MaeIII	GTNAC	4 cut(s)	25, 236, 301, 353
MalI	GATC	3 cut(s)	19, 99, 132
MboI	GATC	3 cut(s)	17, 97, 130
MboII	GAAGA	1 cut(s)	92
MflI	RGATCY	1 cut(s)	97
MluCI	AATT	1 cut(s)	189
MlyI	GAGTC	2 cut(s)	233, 350
MmeI	TCCRAC	1 cut(s)	129
MnlI	CCTC	4 cut(s)	181, 256, 308, 344
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	179
NciI	CCSGG	1 cut(s)	179
NcoI	CCATGG	1 cut(s)	45
NdeII	GATC	3 cut(s)	17, 97, 130
NlaIII	CATG	2 cut(s)	42, 49
NlaIV	GGNNCC	1 cut(s)	99
NmeAIII	GCCGAG	1 cut(s)	229
NmuCI	GTSAC	4 cut(s)	25, 236, 301, 353
PfoI	TCCNGGA	1 cut(s)	177
PleI	GAGTC	2 cut(s)	233, 350
PpsI	GAGTC	2 cut(s)	233, 350
PspN4I	GGNNCC	1 cut(s)	99
PspPI	GGNCC	2 cut(s)	42, 185
PsuI	RGATCY	1 cut(s)	97
RsaI	GTAC	1 cut(s)	258
RsaNI	GTAC	1 cut(s)	257
Sau3AI	GATC	3 cut(s)	17, 97, 130
Sau96I	GGNCC	2 cut(s)	42, 185
SchI	GAGTC	2 cut(s)	233, 350
ScrFI	CCNGG	1 cut(s)	179
SetI	ASST	5 cut(s)	106, 138, 236, 252, 355
SinI	GGWCC	2 cut(s)	42, 185
Sse9I	AATT	1 cut(s)	189
SsiI	CCGC	1 cut(s)	332
StyD4I	CCNGG	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	45
TaqI	TCGA	1 cut(s)	16
TasI	AATT	1 cut(s)	189
TatI	WGTACW	1 cut(s)	256
TseFI	GTSAC	4 cut(s)	25, 236, 301, 353
Tsp45I	GTSAC	4 cut(s)	25, 236, 301, 353
TspGWI	ACGGA	1 cut(s)	44
VpaK11BI	GGWCC	2 cut(s)	42, 185
XcmI	CCANNNNNNNNNTGG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.