RchiOBHm_Chr6g0297121

Vacuolar-processing enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0022600
Physical Location & Seq
Reverse (-)
58823102 .. 58824067
966 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26667

Sequence Viewer

Length: 357 bp
ATGCTTCCTTATGCATTTGTTATCTCGTTTGTTCTTATCTTGTTTGCTGCTATTCTTGGAAACAAAACTGCTATTACCGGGGGTAGTGGGAAAGTTGTGGACAGTGGTCCGAATGATCACATCTTCATATACTACTCCGATCATGCTGGTCCTGGAGTACTTGGGATGCCTACCAGTCCCTATATTTATGCAAACAGGCTCATAGAAGTTCTAAAGAAGAAGCATGCTGCAGGGACATATGAAAGTTTGGTATTTTATCTTGAAGCTTGTGAATCCGGAAGTATCTTTGAGGGTCTTCTTCCTGAAGGTTTGAATATCTTTGCAACTACAGCATCAAATGCAGAAGGGAGCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04612 map04142 map04612
Pfam Domains
Protein Families
Peptidase_C13

Protein Analysis

118

Amino Acids

12.51

Weight (kDa)

5.15

Isoelectric Point (pI)

51.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C13 PF01650 15 - 118 1.2e-39 Peptidase C13 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022600)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0332861 RchiOBHm_Chr6g0297121
rosa_multiflora Rmu_sc0011593.1_g000001
rosa_samantha Rh1DG099100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 1 cut(s) 159
AgsI TTSAA 2 cut(s) 263, 313
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
Aor13HI TCCGGA 1 cut(s) 275
ApeKI GCWGC 2 cut(s) 47, 227
AspS9I GGNCC 2 cut(s) 107, 149
AsuC2I CCSGG 1 cut(s) 79
AvaII GGWCC 2 cut(s) 107, 149
BbsI GAAGAC 1 cut(s) 287
BbvI GCAGC 2 cut(s) 34, 214
BciT130I CCWGG 1 cut(s) 153
BclI TGATCA 1 cut(s) 115
BcnI CCSGG 1 cut(s) 79
BfmI CTRYAG 2 cut(s) 228, 327
BisI GCNGC 2 cut(s) 48, 228
BlsI GCNGC 2 cut(s) 49, 229
BmcAI AGTACT 1 cut(s) 159
Bme1390I CCNGG 2 cut(s) 79, 153
Bme18I GGWCC 2 cut(s) 107, 149
BmgT120I GGNCC 2 cut(s) 107, 149
BmrFI CCNGG 2 cut(s) 79, 153
BmsI GCATC 2 cut(s) 156, 341
BoxI GACNNNNGTC 1 cut(s) 105
BpiI GAAGAC 1 cut(s) 287
BpmI CTGGAG 1 cut(s) 174
BpuMI CCSGG 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 78
BsaWI WCCGGW 1 cut(s) 275
Bse1I ACTGG 1 cut(s) 174
BseAI TCCGGA 1 cut(s) 275
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 1 cut(s) 171
BseNI ACTGG 1 cut(s) 174
BseXI GCAGC 2 cut(s) 34, 214
BsiSI CCGG 2 cut(s) 78, 276
BslFI GGGAC 2 cut(s) 162, 247
BsmFI GGGAC 2 cut(s) 162, 247
Bsp13I TCCGGA 1 cut(s) 275
Bsp143I GATC 2 cut(s) 115, 139
BspEI TCCGGA 1 cut(s) 275
BspMAI CTGCAG 1 cut(s) 232
BsrI ACTGG 1 cut(s) 174
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 2 cut(s) 115, 139
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 104
BstAPI GCANNNNNTGC 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 225
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 2 cut(s) 118, 142
BstMBI GATC 2 cut(s) 115, 139
BstMWI GCNNNNNNNGC 2 cut(s) 329, 338
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 227
BstPAI GACNNNNGTC 1 cut(s) 105
BstSCI CCNGG 2 cut(s) 77, 151
BstSFI CTRYAG 2 cut(s) 228, 327
BstV1I GCAGC 2 cut(s) 34, 214
BstV2I GAAGAC 1 cut(s) 287
BtsCI GGATG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 225
Cfr13I GGNCC 2 cut(s) 107, 149
Csp6I GTAC 1 cut(s) 158
CviAII CATG 2 cut(s) 143, 224
CviJI RGCY 2 cut(s) 199, 266
CviKI_1 RGCY 2 cut(s) 199, 266
CviQI GTAC 1 cut(s) 158
DpnI GATC 2 cut(s) 117, 141
DpnII GATC 2 cut(s) 115, 139
Eco47I GGWCC 2 cut(s) 107, 149
Eco57I CTGAAG 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 151
EcoT22I ATGCAT 1 cut(s) 16
FaeI CATG 2 cut(s) 146, 227
FaqI GGGAC 2 cut(s) 162, 247
FatI CATG 2 cut(s) 142, 223
FauNDI CATATG 1 cut(s) 238
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 48, 228
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 2 cut(s) 48, 228
GluI GCNGC 2 cut(s) 48, 228
GsuI CTGGAG 1 cut(s) 174
HapII CCGG 2 cut(s) 78, 276
Hin1II CATG 2 cut(s) 146, 227
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 1 cut(s) 272
HpaII CCGG 2 cut(s) 78, 276
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 2 cut(s) 111, 139
Hpy188III TCNNGA 3 cut(s) 260, 276, 302
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 2 cut(s) 299, 338
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4V TGCA 5 cut(s) 14, 191, 230, 323, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 338
Hsp92II CATG 2 cut(s) 146, 227
Kpn2I TCCGGA 1 cut(s) 275
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 2 cut(s) 115, 139
LmnI GCTCC 1 cut(s) 348
LpnPI CCDG 9 cut(s) 91, 132, 138, 165, 181, 187, 216, 289, 315
Lsp1109I GCAGC 2 cut(s) 34, 214
LweI GCATC 2 cut(s) 156, 341
MalI GATC 2 cut(s) 117, 141
MboI GATC 2 cut(s) 115, 139
MboII GAAGA 4 cut(s) 115, 229, 287, 290
MnlI CCTC 1 cut(s) 283
Mph1103I ATGCAT 1 cut(s) 16
MroI TCCGGA 1 cut(s) 275
MspI CCGG 2 cut(s) 78, 276
MspR9I CCNGG 2 cut(s) 79, 153
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 2 cut(s) 329, 338
NciI CCSGG 1 cut(s) 79
NdeI CATATG 1 cut(s) 238
NdeII GATC 2 cut(s) 115, 139
NlaIII CATG 2 cut(s) 146, 227
NsiI ATGCAT 1 cut(s) 16
NspI RCATGY 1 cut(s) 227
PaeI GCATGC 1 cut(s) 227
PfeI GAWTC 1 cut(s) 272
PfoI TCCNGGA 1 cut(s) 151
PkrI GCNGC 2 cut(s) 49, 229
PshAI GACNNNNGTC 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspPI GGNCC 2 cut(s) 107, 149
PstI CTGCAG 1 cut(s) 232
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
SatI GCNGC 2 cut(s) 48, 228
Sau3AI GATC 2 cut(s) 115, 139
Sau96I GGNCC 2 cut(s) 107, 149
ScaI AGTACT 1 cut(s) 159
ScrFI CCNGG 2 cut(s) 79, 153
SetI ASST 2 cut(s) 268, 310
SfaNI GCATC 2 cut(s) 156, 341
SfcI CTRYAG 2 cut(s) 228, 327
SinI GGWCC 2 cut(s) 107, 149
SphI GCATGC 1 cut(s) 227
StyD4I CCNGG 2 cut(s) 77, 151
TaaI ACNGT 1 cut(s) 104
TatI WGTACW 1 cut(s) 157
TfiI GAWTC 1 cut(s) 272
TscAI CASTG 1 cut(s) 109
TseI GCWGC 2 cut(s) 47, 227
TspDTI ATGAA 2 cut(s) 115, 255
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 2 cut(s) 107, 149
XceI RCATGY 1 cut(s) 227
ZrmI AGTACT 1 cut(s) 159
Zsp2I ATGCAT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.