Rmu_sc0011593.1_g000001

Vacuolar-processing enzyme-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011593.1
OG0022600
Physical Location & Seq
Reverse (-)
1399 .. 2354
956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011593.1_g000001.1.cds

Sequence Viewer

Length: 357 bp
atgcttccttatgcatttgttatctcgtttgttgttatcttgtttgctgctattcttgaaaacaaaactgctattactgggggtagtggcaaagttgtggacagtggtccgaatgatcacatcatcatatactactccgatcatgctggtcctggagtacttgggatgcctaccagtccctatatttattcaaacaggctcatagaagttctaaagaagaagcatgctgcagggacatatgaaagtttggtattttatcttgaagcttgtgaatccggaagtatctttgagggtcttcttcctgaaggtttgaatatctttgcaactacagcatcaaattcagaagggagcagttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 ko04612 map04142 map04612
Pfam Domains
Protein Families
Peptidase_C13

Protein Analysis

118

Amino Acids

12.57

Weight (kDa)

4.96

Isoelectric Point (pI)

51.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022600)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0332861 RchiOBHm_Chr6g0297121
rosa_multiflora Rmu_sc0011593.1_g000001
rosa_samantha Rh1DG099100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 275
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 324
AfaI GTAC 1 cut(s) 159
AgsI TTSAA 4 cut(s) 59, 192, 263, 313
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
Aor13HI TCCGGA 1 cut(s) 275
ApeKI GCWGC 2 cut(s) 47, 227
ApoI RAATTY 1 cut(s) 337
AspS9I GGNCC 2 cut(s) 107, 149
AvaII GGWCC 2 cut(s) 107, 149
BbsI GAAGAC 1 cut(s) 287
BbvI GCAGC 2 cut(s) 34, 214
BciT130I CCWGG 1 cut(s) 153
BclI TGATCA 1 cut(s) 115
BfmI CTRYAG 2 cut(s) 228, 327
BisI GCNGC 2 cut(s) 48, 228
BlsI GCNGC 2 cut(s) 49, 229
BmcAI AGTACT 1 cut(s) 159
Bme1390I CCNGG 1 cut(s) 153
Bme18I GGWCC 2 cut(s) 107, 149
BmgT120I GGNCC 2 cut(s) 107, 149
BmrFI CCNGG 1 cut(s) 153
BmrI ACTGGG 1 cut(s) 87
BmsI GCATC 2 cut(s) 156, 341
BmuI ACTGGG 1 cut(s) 87
BoxI GACNNNNGTC 1 cut(s) 105
BpiI GAAGAC 1 cut(s) 287
BpmI CTGGAG 1 cut(s) 174
BsaWI WCCGGW 1 cut(s) 275
Bse1I ACTGG 2 cut(s) 82, 174
BseAI TCCGGA 1 cut(s) 275
BseBI CCWGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 171
BseNI ACTGG 2 cut(s) 82, 174
BseXI GCAGC 2 cut(s) 34, 214
BsiSI CCGG 1 cut(s) 276
BslFI GGGAC 2 cut(s) 162, 247
BsmFI GGGAC 2 cut(s) 162, 247
Bsp13I TCCGGA 1 cut(s) 275
Bsp143I GATC 2 cut(s) 115, 139
BspEI TCCGGA 1 cut(s) 275
BspMAI CTGCAG 1 cut(s) 232
BsrI ACTGG 2 cut(s) 82, 174
BssMI GATC 2 cut(s) 115, 139
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 104
BstC8I GCNNGC 1 cut(s) 225
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 2 cut(s) 118, 142
BstMBI GATC 2 cut(s) 115, 139
BstMWI GCNNNNNNNGC 1 cut(s) 329
BstNI CCWGG 1 cut(s) 153
BstNSI RCATGY 1 cut(s) 227
BstPAI GACNNNNGTC 1 cut(s) 105
BstSCI CCNGG 1 cut(s) 151
BstSFI CTRYAG 2 cut(s) 228, 327
BstV1I GCAGC 2 cut(s) 34, 214
BstV2I GAAGAC 1 cut(s) 287
BtsCI GGATG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 225
Cfr13I GGNCC 2 cut(s) 107, 149
Csp6I GTAC 1 cut(s) 158
CviAII CATG 2 cut(s) 143, 224
CviJI RGCY 2 cut(s) 199, 266
CviKI_1 RGCY 2 cut(s) 199, 266
CviQI GTAC 1 cut(s) 158
DpnI GATC 2 cut(s) 117, 141
DpnII GATC 2 cut(s) 115, 139
Eco47I GGWCC 2 cut(s) 107, 149
Eco57I CTGAAG 1 cut(s) 324
EcoRII CCWGG 1 cut(s) 151
EcoT22I ATGCAT 1 cut(s) 16
FaeI CATG 2 cut(s) 146, 227
FaiI YATR 9 cut(s) 12, 128, 130, 144, 183, 203, 225, 238, 240
FaqI GGGAC 2 cut(s) 162, 247
FatI CATG 2 cut(s) 142, 223
FauNDI CATATG 1 cut(s) 238
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 48, 228
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 2 cut(s) 48, 228
GluI GCNGC 2 cut(s) 48, 228
GsuI CTGGAG 1 cut(s) 174
HapII CCGG 1 cut(s) 276
Hin1II CATG 2 cut(s) 146, 227
HindIII AAGCTT 1 cut(s) 264
HinfI GANTC 1 cut(s) 272
HpaII CCGG 1 cut(s) 276
Hpy166II GTNNAC 1 cut(s) 100
Hpy188I TCNGA 3 cut(s) 111, 139, 343
Hpy188III TCNNGA 4 cut(s) 56, 260, 276, 302
Hpy8I GTNNAC 1 cut(s) 100
HpyAV CCTTC 2 cut(s) 299, 338
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4V TGCA 3 cut(s) 14, 230, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 329
Hsp92II CATG 2 cut(s) 146, 227
Kpn2I TCCGGA 1 cut(s) 275
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 2 cut(s) 115, 139
LmnI GCTCC 1 cut(s) 348
LpnPI CCDG 9 cut(s) 63, 132, 138, 165, 181, 187, 216, 289, 315
Lsp1109I GCAGC 2 cut(s) 34, 214
LweI GCATC 2 cut(s) 156, 341
MalI GATC 2 cut(s) 117, 141
MboI GATC 2 cut(s) 115, 139
MboII GAAGA 3 cut(s) 229, 287, 290
MluCI AATT 1 cut(s) 337
MnlI CCTC 1 cut(s) 283
Mph1103I ATGCAT 1 cut(s) 16
MroI TCCGGA 1 cut(s) 275
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 1 cut(s) 153
MvaI CCWGG 1 cut(s) 153
MwoI GCNNNNNNNGC 1 cut(s) 329
NdeI CATATG 1 cut(s) 238
NdeII GATC 2 cut(s) 115, 139
NlaIII CATG 2 cut(s) 146, 227
NsiI ATGCAT 1 cut(s) 16
NspI RCATGY 1 cut(s) 227
PaeI GCATGC 1 cut(s) 227
PfeI GAWTC 1 cut(s) 272
PfoI TCCNGGA 1 cut(s) 151
PkrI GCNGC 2 cut(s) 49, 229
PshAI GACNNNNGTC 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspPI GGNCC 2 cut(s) 107, 149
PstI CTGCAG 1 cut(s) 232
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
SatI GCNGC 2 cut(s) 48, 228
Sau3AI GATC 2 cut(s) 115, 139
Sau96I GGNCC 2 cut(s) 107, 149
ScaI AGTACT 1 cut(s) 159
ScrFI CCNGG 1 cut(s) 153
SetI ASST 2 cut(s) 268, 310
SfaNI GCATC 2 cut(s) 156, 341
SfcI CTRYAG 2 cut(s) 228, 327
SinI GGWCC 2 cut(s) 107, 149
SphI GCATGC 1 cut(s) 227
Sse9I AATT 1 cut(s) 337
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 104
TasI AATT 1 cut(s) 337
TatI WGTACW 1 cut(s) 157
TfiI GAWTC 1 cut(s) 272
TscAI CASTG 1 cut(s) 109
TseI GCWGC 2 cut(s) 47, 227
TspDTI ATGAA 1 cut(s) 255
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 2 cut(s) 107, 149
XapI RAATTY 1 cut(s) 337
XceI RCATGY 1 cut(s) 227
ZrmI AGTACT 1 cut(s) 159
Zsp2I ATGCAT 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.