Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030318

Physical Location & Seq

Genomic Coordinates Forward (+)

62438434 .. 62444285

Gene Structure 5852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27156

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGAGAAAGGGGCGTGCGACTACCTCAAAGCTGTTCTGCTGGCTCCTCAGCTATTTCTACCAAGGAAAAAGTTATAAGGATGGCTCCATGCTTTGGTGGGATATTAGAAATCCAGGTGTTCCAGTTACATCTGTCAAGTTTCATTCAGAGCCAGTTTTAAGCCTATGCATTGATGGTTCATGCAATGGTGGTATCTCAGGAACTGCAGATGAAAAAATTGTGCCCTACAGTTTGGACACTTCCATAGTGCATTCGACACCCTTCTCTGACTTCTTGCTGGACTGCACAGGACGCGCCGCCTTAAACGAGCTCTCATCTCAAGACCTACGAATATTCAGACGCATGAACGAGGTTGCGATTCAGCTGGTGAGTGTTGCTGTTGCAATTGAGCTCCTGATGTTGACTTTTGTTTTGATGCTTACTCCGCCCGCAGCTTTGGTCAGGTTACATCGTATGATGCTTGAAGATTTGTCGAATGGTACTGTGAGCACGTTGCCATTTGCTTTGAAAGAGTTTGTCCATATCAAAGAAGGGTTGCAGTTGTGGAGAAGAAATTTTGTTGTCTCTGGATGTAATGAATTATTTTTAGTTCGCGAATTGGTTTGTAATGCAGTCTCTTATTCAACAGATTGTAAGCTAATGGCCACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006282 GO:0006810 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0009555 GO:0009636 GO:0009663 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010162 GO:0010431 GO:0010496 GO:0010497 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031461 GO:0031570 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034330 GO:0035670 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045216 GO:0045786 GO:0045787 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048609 GO:0048700 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0071156 GO:0071158 GO:0071695 GO:0071840 GO:0072718 GO:0080008 GO:0080090 GO:0080134 GO:0080135 GO:0090068 GO:0090567 GO:0097327 GO:0097439 GO:0099402 GO:1902494 GO:1990234 GO:2000026 GO:2000280 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

217

Amino Acids

24.24

Weight (kDa)

7.59

Isoelectric Point (pI)

36.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030318)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0302301
rosa_roxburghii	Rroxscaffold_1G00067830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	75
AccB7I	CCANNNNNTGG	1 cut(s)	93
AccII	CGCG	2 cut(s)	294, 594
AciI	CCGC	3 cut(s)	297, 425, 429
AcoI	YGGCCR	1 cut(s)	642
AcsI	RAATTY	1 cut(s)	553
AfaI	GTAC	1 cut(s)	481
AfiI	CCNNNNNNNGG	1 cut(s)	93
AgsI	TTSAA	3 cut(s)	464, 508, 624
AjnI	CCWGG	1 cut(s)	112
AluBI	AGCT	7 cut(s)	31, 51, 310, 364, 391, 434, 637
AluI	AGCT	7 cut(s)	31, 51, 310, 364, 391, 434, 637
Alw21I	GWGCWC	3 cut(s)	312, 393, 491
Alw26I	GTCTC	2 cut(s)	568, 619
AlwNI	CAGNNNCTG	1 cut(s)	203
AoxI	GGCC	1 cut(s)	642
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	1 cut(s)	553
ArsI	GACNNNNNNTTYG	2 cut(s)	394, 426
AspLEI	GCGC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	379
BaeGI	GKGCMC	1 cut(s)	225
BalI	TGGCCA	1 cut(s)	644
BanII	GRGCYC	2 cut(s)	312, 393
Bbv12I	GWGCWC	3 cut(s)	312, 393, 491
BbvCI	CCTCAGC	1 cut(s)	47
BbvI	GCAGC	1 cut(s)	443
BccI	CCATC	2 cut(s)	74, 167
BciT130I	CCWGG	1 cut(s)	114
BcoDI	GTCTC	2 cut(s)	568, 619
BfmI	CTRYAG	2 cut(s)	204, 226
BisI	GCNGC	2 cut(s)	297, 432
BlsI	GCNGC	2 cut(s)	298, 433
Bme1390I	CCNGG	1 cut(s)	114
BmiI	GGNNCC	2 cut(s)	44, 85
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	2 cut(s)	405, 447
Bpu10I	CCTNAGC	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	303
BsaJI	CCNNGG	1 cut(s)	61
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse1I	ACTGG	2 cut(s)	122, 152
Bse3DI	GCAATG	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	2 cut(s)	85, 575
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMI	GCAATG	1 cut(s)	190
BseMII	CTCAG	2 cut(s)	61, 210
BseNI	ACTGG	2 cut(s)	122, 152
BseRI	GAGGAG	1 cut(s)	35
BseSI	GKGCMC	1 cut(s)	225
BseXI	GCAGC	1 cut(s)	443
BsgI	GTGCAG	1 cut(s)	268
Bsh1236I	CGCG	2 cut(s)	294, 594
BshFI	GGCC	1 cut(s)	644
BsiHKAI	GWGCWC	3 cut(s)	312, 393, 491
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	2 cut(s)	568, 619
BsmI	GAATGC	1 cut(s)	250
BsnI	GGCC	1 cut(s)	644
Bsp1286I	GDGCHC	4 cut(s)	225, 312, 393, 491
Bsp68I	TCGCGA	1 cut(s)	594
BspACI	CCGC	3 cut(s)	297, 425, 429
BspANI	GGCC	1 cut(s)	644
BspCNI	CTCAG	2 cut(s)	60, 209
BspFNI	CGCG	2 cut(s)	294, 594
BspLI	GGNNCC	2 cut(s)	44, 85
BspMAI	CTGCAG	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	190
BsrI	ACTGG	2 cut(s)	122, 152
BssECI	CCNNGG	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	61
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	2 cut(s)	230, 484
BstC8I	GCNNGC	3 cut(s)	15, 41, 429
BstDEI	CTNAG	2 cut(s)	47, 196
BstF5I	GGATG	2 cut(s)	85, 575
BstFNI	CGCG	2 cut(s)	294, 594
BstHHI	GCGC	1 cut(s)	296
BstMAI	GTCTC	2 cut(s)	568, 619
BstMWI	GCNNNNNNNGC	2 cut(s)	291, 424
BstNI	CCWGG	1 cut(s)	114
BstSCI	CCNGG	1 cut(s)	112
BstSFI	CTRYAG	2 cut(s)	204, 226
BstSLI	GKGCMC	1 cut(s)	225
BstUI	CGCG	2 cut(s)	294, 594
BstV1I	GCAGC	1 cut(s)	443
BsuRI	GGCC	1 cut(s)	644
BtsCI	GGATG	2 cut(s)	85, 575
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	1 cut(s)	645
BtuMI	TCGCGA	1 cut(s)	594
Cac8I	GCNNGC	3 cut(s)	15, 41, 429
CaiI	CAGNNNCTG	1 cut(s)	203
CfoI	GCGC	1 cut(s)	296
CseI	GACGC	2 cut(s)	300, 348
Csp6I	GTAC	1 cut(s)	480
CviAII	CATG	3 cut(s)	88, 180, 343
CviQI	GTAC	1 cut(s)	480
DdeI	CTNAG	2 cut(s)	47, 196
EaeI	YGGCCR	1 cut(s)	642
EciI	GGCGGA	1 cut(s)	414
Ecl136II	GAGCTC	2 cut(s)	310, 391
Eco130I	CCWWGG	1 cut(s)	61
Eco24I	GRGCYC	2 cut(s)	312, 393
Eco53kI	GAGCTC	2 cut(s)	310, 391
EcoICRI	GAGCTC	2 cut(s)	310, 391
EcoRII	CCWGG	1 cut(s)	112
EcoT14I	CCWWGG	1 cut(s)	61
EcoT22I	ATGCAT	1 cut(s)	170
EcoT38I	GRGCYC	2 cut(s)	312, 393
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	3 cut(s)	91, 183, 346
FaiI	YATR	9 cut(s)	75, 89, 166, 181, 245, 344, 455, 522, 652
FatI	CATG	3 cut(s)	87, 179, 342
FauI	CCCGC	1 cut(s)	436
Fnu4HI	GCNGC	2 cut(s)	297, 432
FokI	GGATG	2 cut(s)	92, 582
FriOI	GRGCYC	2 cut(s)	312, 393
Fsp4HI	GCNGC	2 cut(s)	297, 432
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	2 cut(s)	297, 432
HaeIII	GGCC	1 cut(s)	644
HgaI	GACGC	2 cut(s)	300, 348
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	3 cut(s)	91, 183, 346
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HinfI	GANTC	1 cut(s)	358
HphI	GGTGA	1 cut(s)	379
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	3 cut(s)	148, 268, 338
Hpy188III	TCNNGA	5 cut(s)	198, 320, 394, 567, 593
Hpy8I	GTNNAC	1 cut(s)	402
HpyAV	CCTTC	2 cut(s)	271, 524
HpyCH4III	ACNGT	2 cut(s)	230, 484
HpyCH4IV	ACGT	1 cut(s)	491
HpyCH4V	TGCA	9 cut(s)	168, 183, 206, 250, 285, 383, 538, 611, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	291, 424
HpyF3I	CTNAG	2 cut(s)	47, 196
HpySE526I	ACGT	1 cut(s)	491
Hsp92II	CATG	3 cut(s)	91, 183, 346
HspAI	GCGC	1 cut(s)	294
LmnI	GCTCC	3 cut(s)	48, 89, 396
Lsp1109I	GCAGC	1 cut(s)	443
LweI	GCATC	2 cut(s)	405, 447
MaeII	ACGT	1 cut(s)	491
MaeIII	GTNAC	2 cut(s)	124, 444
MboII	GAAGA	2 cut(s)	476, 561
MfeI	CAATTG	1 cut(s)	384
MhlI	GDGCHC	4 cut(s)	225, 312, 393, 491
MlsI	TGGCCA	1 cut(s)	644
MluCI	AATT	5 cut(s)	216, 384, 553, 578, 596
MluNI	TGGCCA	1 cut(s)	644
MnlI	CCTC	3 cut(s)	34, 56, 343
Mox20I	TGGCCA	1 cut(s)	644
Mph1103I	ATGCAT	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	644
MseI	TTAA	2 cut(s)	158, 302
Msp20I	TGGCCA	1 cut(s)	644
MspA1I	CMGCKG	1 cut(s)	364
MspR9I	CCNGG	1 cut(s)	114
MunI	CAATTG	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	250
MvaI	CCWGG	1 cut(s)	114
MvnI	CGCG	2 cut(s)	294, 594
MwoI	GCNNNNNNNGC	2 cut(s)	291, 424
NlaIII	CATG	3 cut(s)	91, 183, 346
NlaIV	GGNNCC	2 cut(s)	44, 85
NruI	TCGCGA	1 cut(s)	594
NsiI	ATGCAT	1 cut(s)	170
PctI	GAATGC	1 cut(s)	250
PfeI	GAWTC	1 cut(s)	358
PflMI	CCANNNNNTGG	1 cut(s)	93
PkrI	GCNGC	2 cut(s)	298, 433
PsiI	TTATAA	1 cut(s)	75
Psp124BI	GAGCTC	2 cut(s)	312, 393
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	2 cut(s)	44, 85
PstI	CTGCAG	1 cut(s)	208
PstNI	CAGNNNCTG	1 cut(s)	203
PvuII	CAGCTG	1 cut(s)	364
RruI	TCGCGA	1 cut(s)	594
RsaI	GTAC	1 cut(s)	481
RsaNI	GTAC	1 cut(s)	480
SacI	GAGCTC	2 cut(s)	312, 393
SaqAI	TTAA	2 cut(s)	158, 302
SatI	GCNGC	2 cut(s)	297, 432
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	4 cut(s)	225, 312, 393, 491
SfaNI	GCATC	2 cut(s)	405, 447
SfcI	CTRYAG	2 cut(s)	204, 226
SmlI	CTYRAG	1 cut(s)	318
SmoI	CTYRAG	1 cut(s)	318
Sse9I	AATT	5 cut(s)	216, 384, 553, 578, 596
SsiI	CCGC	3 cut(s)	297, 425, 429
SspI	AATATT	1 cut(s)	333
SstI	GAGCTC	2 cut(s)	312, 393
StyD4I	CCNGG	1 cut(s)	112
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	2 cut(s)	230, 484
TaiI	ACGT	1 cut(s)	494
TaqI	TCGA	2 cut(s)	254, 473
TasI	AATT	5 cut(s)	216, 384, 553, 578, 596
TauI	GCSGC	1 cut(s)	299
TfiI	GAWTC	1 cut(s)	358
Tru1I	TTAA	2 cut(s)	158, 302
Tru9I	TTAA	2 cut(s)	158, 302
TscAI	CASTG	1 cut(s)	652
TseI	GCWGC	1 cut(s)	431
TspDTI	ATGAA	5 cut(s)	131, 168, 225, 359, 591
TspRI	CASTG	1 cut(s)	652
Van91I	CCANNNNNTGG	1 cut(s)	93
XapI	RAATTY	1 cut(s)	553
Zsp2I	ATGCAT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.