Rroxscaffold_1G00067830

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
89109807 .. 89110133
327 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00067830.1

Sequence Viewer

Length: 156 bp
ATGGTATTATGGATGAGAACTTCAAGTACTGTGAGCATGTTGCCATTTGCTTTGAAAGAGTTTGTCCATATCAAAGAAGGGTTGCAGTTGTGGAGAAGAAATTTTGTTGTCTCTGCATGTAATGAATTATTTTTAGTTGGCAAATTTGTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

51

Amino Acids

5.96

Weight (kDa)

9.78

Isoelectric Point (pI)

61.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030318)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0302301
rosa_roxburghii Rroxscaffold_1G00067830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 100, 143
AfaI GTAC 1 cut(s) 28
AgsI TTSAA 2 cut(s) 24, 55
Alw26I GTCTC 1 cut(s) 115
ApoI RAATTY 2 cut(s) 100, 143
BcoDI GTCTC 1 cut(s) 115
BmcAI AGTACT 1 cut(s) 28
BseGI GGATG 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 115
Bst4CI ACNGT 1 cut(s) 31
BstF5I GGATG 1 cut(s) 18
BstMAI GTCTC 1 cut(s) 115
BstNSI RCATGY 2 cut(s) 40, 120
BtsCI GGATG 1 cut(s) 18
Csp6I GTAC 1 cut(s) 27
CviAII CATG 2 cut(s) 37, 117
CviQI GTAC 1 cut(s) 27
FaeI CATG 2 cut(s) 40, 120
FaiI YATR 5 cut(s) 10, 38, 69, 118, 154
FatI CATG 2 cut(s) 36, 116
FokI GGATG 1 cut(s) 25
FspEI CC 6 cut(s) 57, 63, 64, 76, 80, 123
Hin1II CATG 2 cut(s) 40, 120
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 85, 116
Hsp92II CATG 2 cut(s) 40, 120
MboII GAAGA 1 cut(s) 108
MluCI AATT 3 cut(s) 100, 125, 143
NlaIII CATG 2 cut(s) 40, 120
NspI RCATGY 2 cut(s) 40, 120
PsrI GAACNNNNNNTAC 2 cut(s) 10, 42
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
ScaI AGTACT 1 cut(s) 28
SgeI CNNG 3 cut(s) 36, 49, 129
Sse9I AATT 3 cut(s) 100, 125, 143
TaaI ACNGT 1 cut(s) 31
TasI AATT 3 cut(s) 100, 125, 143
TatI WGTACW 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 138
XapI RAATTY 2 cut(s) 100, 143
XceI RCATGY 2 cut(s) 40, 120
ZrmI AGTACT 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.