RchiOBHm_Chr6g0304601

Glutamate receptor

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
63795709 .. 63796009
301 bp
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UTR
Exon/CDS
Intron
PRQ27370

Sequence Viewer

Length: 258 bp
ATGCATGTAAGGAATTATCTTCGCGATGTCCTGATACAAGCAGGTTTTCATGAGTCCAAACTTCAGCATCTTAAAACCATGGAAGAAATTGATGATGCTCTTTCAAAAGGGAGTGCAAATGGCGGAGTTGCTGTTGTTGTGGATGAAACTCCCAGCATGAAGCTTTTCCTTGCAAAATACTGCAACAAATATGCAATGAGTACTAGACCGTTGTTTAAAACTGATGGTCTTGCCTTTGTAAGACCTAGTCTCTTCTAG

Protein Analysis

85

Amino Acids

9.55

Weight (kDa)

8.82

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030386)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0304601
rosa_multiflora Rmu_ssc0000218.1_g000061

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 32
AccII CGCG 1 cut(s) 24
AciI CCGC 1 cut(s) 123
AcuI CTGAAG 1 cut(s) 47
AfaI GTAC 1 cut(s) 202
AgsI TTSAA 1 cut(s) 105
AluBI AGCT 1 cut(s) 163
AluI AGCT 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 254
Asp700I GAANNNNTTC 1 cut(s) 164
BccI CCATC 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 3 cut(s) 204, 246, 256
BfuAI ACCTGC 1 cut(s) 32
BmcAI AGTACT 1 cut(s) 202
BmsI GCATC 2 cut(s) 76, 85
BsaJI CCNNGG 1 cut(s) 78
BsaXI ACNNNNNCTCC 2 cut(s) 117, 147
Bse3DI GCAATG 1 cut(s) 201
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 1 cut(s) 148
BseMI GCAATG 1 cut(s) 201
BseYI CCCAGC 1 cut(s) 152
Bsh1236I CGCG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 254
Bsp19I CCATGG 1 cut(s) 78
Bsp68I TCGCGA 1 cut(s) 24
BspACI CCGC 1 cut(s) 123
BspFNI CGCG 1 cut(s) 24
BspHI TCATGA 1 cut(s) 49
BspMI ACCTGC 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 78
BstF5I GGATG 1 cut(s) 148
BstFNI CGCG 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 254
BstNSI RCATGY 1 cut(s) 8
BstUI CGCG 1 cut(s) 24
BtgI CCRYGG 1 cut(s) 78
BtgZI GCGATG 1 cut(s) 39
BtsCI GGATG 1 cut(s) 148
BtuMI TCGCGA 1 cut(s) 24
BveI ACCTGC 1 cut(s) 32
CciI TCATGA 1 cut(s) 49
Csp6I GTAC 1 cut(s) 201
CviAII CATG 4 cut(s) 5, 50, 79, 157
CviJI RGCY 1 cut(s) 163
CviKI_1 RGCY 1 cut(s) 163
CviQI GTAC 1 cut(s) 201
DraI TTTAAA 1 cut(s) 217
EciI GGCGGA 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 47
EcoT14I CCWWGG 1 cut(s) 78
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 4 cut(s) 8, 53, 82, 160
FaiI YATR 5 cut(s) 6, 51, 80, 158, 192
FatI CATG 4 cut(s) 4, 49, 78, 156
FokI GGATG 1 cut(s) 155
FspBI CTAG 3 cut(s) 204, 246, 256
GsaI CCCAGC 1 cut(s) 156
Hin1II CATG 4 cut(s) 8, 53, 82, 160
HindIII AAGCTT 1 cut(s) 161
HinfI GANTC 1 cut(s) 53
Hpy188III TCNNGA 3 cut(s) 23, 31, 50
HpyCH4III ACNGT 1 cut(s) 210
HpyCH4V TGCA 5 cut(s) 4, 116, 173, 183, 194
Hsp92II CATG 4 cut(s) 8, 53, 82, 160
LpnPI CCDG 3 cut(s) 27, 44, 166
LweI GCATC 2 cut(s) 76, 85
MaeI CTAG 3 cut(s) 204, 246, 256
MboII GAAGA 3 cut(s) 11, 95, 244
MluCI AATT 2 cut(s) 13, 87
MlyI GAGTC 1 cut(s) 62
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 2 cut(s) 72, 216
MvnI CGCG 1 cut(s) 24
NcoI CCATGG 1 cut(s) 78
NlaIII CATG 4 cut(s) 8, 53, 82, 160
NruI TCGCGA 1 cut(s) 24
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PagI TCATGA 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 164
PflFI GACNNNGTC 1 cut(s) 246
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PspFI CCCAGC 1 cut(s) 152
PsyI GACNNNGTC 1 cut(s) 246
RruI TCGCGA 1 cut(s) 24
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SaqAI TTAA 2 cut(s) 72, 216
ScaI AGTACT 1 cut(s) 202
SchI GAGTC 1 cut(s) 62
SetI ASST 3 cut(s) 46, 165, 247
SfaNI GCATC 2 cut(s) 76, 85
Sse9I AATT 2 cut(s) 13, 87
SsiI CCGC 1 cut(s) 123
SspMI CTAG 3 cut(s) 204, 246, 256
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 210
TasI AATT 2 cut(s) 13, 87
TatI WGTACW 1 cut(s) 200
Tru1I TTAA 2 cut(s) 72, 216
Tru9I TTAA 2 cut(s) 72, 216
TspDTI ATGAA 3 cut(s) 38, 159, 173
Tth111I GACNNNGTC 1 cut(s) 246
XceI RCATGY 1 cut(s) 8
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 3 cut(s) 204, 246, 256
ZrmI AGTACT 1 cut(s) 202
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.