Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000218.1

Orthogroup ID

OG0030386

Physical Location & Seq

Genomic Coordinates Forward (+)

260832 .. 262685

Gene Structure 1854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000218.1_g000061.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgcatgtaaggaattatcttcgcgatgtcctgatacaagcaggttttcatgagtccaaacttcagcatcttaaaaccgtggaagaaattgatgatgctctttcaaaagggagtgcaaatggcggagttgcagctgttgtggatgaaactcccagcatgaagcttttccttgcaaaatactgcaacaaatatgcaatgagtactagaccgttgtttaaaaccgatggccttgcctttaaagtttgtcgcactttatcgggcgatcggcaactggggctgagatgggtctttctgccttgctttcactcgaaggcggaggttgcccaggatttgggttcgcggcagctggtggagatcaattgtgttgcaggtttgtggatttgtggttcgatccgagcagagctcattgaaaacccgttggcgatcggcgttaagtttagaaggattgaccatggtgggtgtgaggagggtgacggtgggtttctcggagctggtattgatcatcatggaatggggggatcgagttttggggttgtggcggtgggggtcgctatctgtcggcgaggttggtgggatgcaccgccgccaccggcctgtgcagcagctgtaataggctggagttacagtttgggcactctggctctttgccatggctctgttgggggcctggtggttcttgggcctgaagccctgaagttcctctctaggtccaagatgctttattttttgttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

244

Amino Acids

26.29

Weight (kDa)

8.36

Isoelectric Point (pI)

46.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030386)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0304601
rosa_multiflora	Rmu_ssc0000218.1_g000061

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	32, 359
AccB7I	CCANNNNNTGG	1 cut(s)	331
AccII	CGCG	2 cut(s)	24, 340
AciI	CCGC	6 cut(s)	123, 314, 340, 539, 581, 584
AclWI	GGATC	2 cut(s)	385, 526
AcuI	CTGAAG	3 cut(s)	47, 705, 713
AfaI	GTAC	1 cut(s)	202
AfiI	CCNNNNNNNGG	1 cut(s)	331
AgsI	TTSAA	2 cut(s)	105, 410
AjnI	CCWGG	2 cut(s)	324, 666
AloI	GAACNNNNNNTCC	2 cut(s)	370, 402
AluBI	AGCT	6 cut(s)	134, 163, 346, 403, 491, 605
AluI	AGCT	6 cut(s)	134, 163, 346, 403, 491, 605
Alw21I	GWGCWC	1 cut(s)	405
AlwI	GGATC	2 cut(s)	385, 526
AlwNI	CAGNNNCTG	1 cut(s)	605
AoxI	GGCC	4 cut(s)	226, 591, 664, 680
ApeKI	GCWGC	4 cut(s)	131, 343, 599, 602
Asp700I	GAANNNNTTC	1 cut(s)	164
AspS9I	GGNCC	3 cut(s)	664, 680, 708
AsuHPI	GGTGA	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	708
BaeGI	GKGCMC	1 cut(s)	635
BanII	GRGCYC	1 cut(s)	405
Bbv12I	GWGCWC	1 cut(s)	405
BbvI	GCAGC	4 cut(s)	143, 355, 611, 614
BccI	CCATC	2 cut(s)	218, 276
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BciT130I	CCWGG	2 cut(s)	326, 668
BclI	TGATCA	1 cut(s)	499
BfaI	CTAG	2 cut(s)	204, 705
BfuAI	ACCTGC	2 cut(s)	32, 359
BisI	GCNGC	6 cut(s)	132, 341, 344, 584, 600, 603
BlsI	GCNGC	6 cut(s)	133, 342, 345, 585, 601, 604
BmcAI	AGTACT	1 cut(s)	202
Bme1390I	CCNGG	2 cut(s)	326, 668
Bme18I	GGWCC	1 cut(s)	708
BmgT120I	GGNCC	3 cut(s)	664, 680, 708
BmiI	GGNNCC	1 cut(s)	665
BmrFI	CCNGG	2 cut(s)	326, 668
BmrI	ACTGGG	1 cut(s)	281
BmsI	GCATC	4 cut(s)	76, 85, 565, 705
BmuI	ACTGGG	1 cut(s)	281
BplI	GAGNNNNNCTC	2 cut(s)	387, 419
BpmI	CTGGAG	1 cut(s)	637
BsaJI	CCNNGG	4 cut(s)	78, 324, 451, 649
BsaXI	ACNNNNNCTCC	2 cut(s)	610, 640
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse118I	RCCGGY	1 cut(s)	589
Bse1I	ACTGG	1 cut(s)	276
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	2 cut(s)	326, 668
BseDI	CCNNGG	4 cut(s)	78, 324, 451, 649
BseGI	GGATG	2 cut(s)	148, 580
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	276
BseRI	GAGGAG	1 cut(s)	479
BseSI	GKGCMC	1 cut(s)	635
BseXI	GCAGC	4 cut(s)	143, 355, 611, 614
BseYI	CCCAGC	1 cut(s)	152
BsgI	GTGCAG	1 cut(s)	618
Bsh1236I	CGCG	2 cut(s)	24, 340
Bsh1285I	CGRYCG	2 cut(s)	265, 426
BshFI	GGCC	4 cut(s)	228, 593, 666, 682
BsiEI	CGRYCG	2 cut(s)	265, 426
BsiHKAI	GWGCWC	1 cut(s)	405
BsiSI	CCGG	1 cut(s)	590
BslI	CCNNNNNNNGG	1 cut(s)	331
BsnI	GGCC	4 cut(s)	228, 593, 666, 682
Bsp1286I	GDGCHC	2 cut(s)	405, 635
Bsp143I	GATC	6 cut(s)	262, 354, 390, 423, 499, 518
Bsp19I	CCATGG	2 cut(s)	451, 649
Bsp68I	TCGCGA	1 cut(s)	24
BspACI	CCGC	6 cut(s)	123, 314, 340, 539, 581, 584
BspANI	GGCC	4 cut(s)	228, 593, 666, 682
BspCNI	CTCAG	1 cut(s)	270
BspFNI	CGCG	2 cut(s)	24, 340
BspHI	TCATGA	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	665
BspMI	ACCTGC	2 cut(s)	32, 359
BspPI	GGATC	2 cut(s)	385, 526
BsrDI	GCAATG	1 cut(s)	201
BsrFI	RCCGGY	1 cut(s)	589
BsrI	ACTGG	1 cut(s)	276
BssAI	RCCGGY	1 cut(s)	589
BssECI	CCNNGG	4 cut(s)	78, 324, 451, 649
BssMI	GATC	6 cut(s)	262, 354, 390, 423, 499, 518
BssT1I	CCWWGG	2 cut(s)	451, 649
Bst2UI	CCWGG	2 cut(s)	326, 668
Bst4CI	ACNGT	4 cut(s)	79, 210, 476, 626
BstDEI	CTNAG	1 cut(s)	278
BstDSI	CCRYGG	3 cut(s)	78, 451, 649
BstF5I	GGATG	2 cut(s)	148, 580
BstFNI	CGCG	2 cut(s)	24, 340
BstKTI	GATC	6 cut(s)	265, 357, 393, 426, 502, 521
BstMBI	GATC	6 cut(s)	262, 354, 390, 423, 499, 518
BstMCI	CGRYCG	2 cut(s)	265, 426
BstMWI	GCNNNNNNNGC	3 cut(s)	274, 320, 599
BstNI	CCWGG	2 cut(s)	326, 668
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	324, 666
BstSLI	GKGCMC	1 cut(s)	635
BstUI	CGCG	2 cut(s)	24, 340
BstV1I	GCAGC	4 cut(s)	143, 355, 611, 614
BsuRI	GGCC	4 cut(s)	228, 593, 666, 682
BtgI	CCRYGG	3 cut(s)	78, 451, 649
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	148, 580
BtuMI	TCGCGA	1 cut(s)	24
BveI	ACCTGC	2 cut(s)	32, 359
CaiI	CAGNNNCTG	1 cut(s)	605
CciI	TCATGA	1 cut(s)	49
Cfr10I	RCCGGY	1 cut(s)	589
Cfr13I	GGNCC	3 cut(s)	664, 680, 708
Csp6I	GTAC	1 cut(s)	201
CviAII	CATG	6 cut(s)	5, 50, 157, 452, 506, 650
CviQI	GTAC	1 cut(s)	201
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	6 cut(s)	264, 356, 392, 425, 501, 520
DpnII	GATC	6 cut(s)	262, 354, 390, 423, 499, 518
DraI	TTTAAA	2 cut(s)	217, 238
EciI	GGCGGA	2 cut(s)	138, 329
Ecl136II	GAGCTC	1 cut(s)	403
Eco130I	CCWWGG	2 cut(s)	451, 649
Eco24I	GRGCYC	1 cut(s)	405
Eco47I	GGWCC	1 cut(s)	708
Eco53kI	GAGCTC	1 cut(s)	403
Eco57I	CTGAAG	3 cut(s)	47, 705, 713
EcoICRI	GAGCTC	1 cut(s)	403
EcoO109I	RGGNCCY	1 cut(s)	664
EcoRII	CCWGG	2 cut(s)	324, 666
EcoT14I	CCWWGG	2 cut(s)	451, 649
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	405
ErhI	CCWWGG	2 cut(s)	451, 649
FaeI	CATG	6 cut(s)	8, 53, 160, 455, 509, 653
FaiI	YATR	7 cut(s)	6, 51, 158, 192, 453, 507, 651
FatI	CATG	6 cut(s)	4, 49, 156, 451, 505, 649
FbaI	TGATCA	1 cut(s)	499
Fnu4HI	GCNGC	6 cut(s)	132, 341, 344, 584, 600, 603
FokI	GGATG	2 cut(s)	155, 587
FriOI	GRGCYC	1 cut(s)	405
Fsp4HI	GCNGC	6 cut(s)	132, 341, 344, 584, 600, 603
FspBI	CTAG	2 cut(s)	204, 705
GluI	GCNGC	6 cut(s)	132, 341, 344, 584, 600, 603
GsaI	CCCAGC	1 cut(s)	156
GsuI	CTGGAG	1 cut(s)	637
HaeIII	GGCC	4 cut(s)	228, 593, 666, 682
HapII	CCGG	1 cut(s)	590
Hin1II	CATG	6 cut(s)	8, 53, 160, 455, 509, 653
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	1 cut(s)	53
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	1 cut(s)	482
Hpy188I	TCNGA	2 cut(s)	395, 488
Hpy188III	TCNNGA	3 cut(s)	23, 31, 50
HpyAV	CCTTC	2 cut(s)	304, 435
HpyCH4III	ACNGT	4 cut(s)	79, 210, 476, 626
HpyCH4V	TGCA	9 cut(s)	4, 116, 131, 173, 183, 194, 368, 578, 599
HpyF10VI	GCNNNNNNNGC	3 cut(s)	274, 320, 599
HpyF3I	CTNAG	1 cut(s)	278
Hsp92II	CATG	6 cut(s)	8, 53, 160, 455, 509, 653
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	6 cut(s)	262, 354, 390, 423, 499, 518
LmnI	GCTCC	1 cut(s)	488
Lsp1109I	GCAGC	4 cut(s)	143, 355, 611, 614
LweI	GCATC	4 cut(s)	76, 85, 565, 705
MaeI	CTAG	2 cut(s)	204, 705
MaeIII	GTNAC	2 cut(s)	470, 620
MalI	GATC	6 cut(s)	264, 356, 392, 425, 501, 520
MboI	GATC	6 cut(s)	262, 354, 390, 423, 499, 518
MboII	GAAGA	2 cut(s)	11, 95
MfeI	CAATTG	1 cut(s)	358
MhlI	GDGCHC	2 cut(s)	405, 635
MluCI	AATT	3 cut(s)	13, 87, 358
MlyI	GAGTC	1 cut(s)	62
MnlI	CCTC	5 cut(s)	310, 457, 460, 557, 710
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	164
MseI	TTAA	5 cut(s)	72, 216, 237, 432, 733
MspA1I	CMGCKG	3 cut(s)	134, 346, 605
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	2 cut(s)	326, 668
MunI	CAATTG	1 cut(s)	358
MvaI	CCWGG	2 cut(s)	326, 668
MvnI	CGCG	2 cut(s)	24, 340
MwoI	GCNNNNNNNGC	3 cut(s)	274, 320, 599
NcoI	CCATGG	2 cut(s)	451, 649
NdeII	GATC	6 cut(s)	262, 354, 390, 423, 499, 518
NlaIII	CATG	6 cut(s)	8, 53, 160, 455, 509, 653
NlaIV	GGNNCC	1 cut(s)	665
NmuCI	GTSAC	1 cut(s)	470
NruI	TCGCGA	1 cut(s)	24
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PagI	TCATGA	1 cut(s)	49
PdmI	GAANNNNTTC	1 cut(s)	164
PflMI	CCANNNNNTGG	1 cut(s)	331
PkrI	GCNGC	6 cut(s)	133, 342, 345, 585, 601, 604
Ple19I	CGATCG	2 cut(s)	265, 426
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp124BI	GAGCTC	1 cut(s)	405
Psp6I	CCWGG	2 cut(s)	324, 666
PspFI	CCCAGC	1 cut(s)	152
PspGI	CCWGG	2 cut(s)	324, 666
PspN4I	GGNNCC	1 cut(s)	665
PspPI	GGNCC	3 cut(s)	664, 680, 708
PstNI	CAGNNNCTG	1 cut(s)	605
PvuI	CGATCG	2 cut(s)	265, 426
PvuII	CAGCTG	3 cut(s)	134, 346, 605
RruI	TCGCGA	1 cut(s)	24
RsaI	GTAC	1 cut(s)	202
RsaNI	GTAC	1 cut(s)	201
SacI	GAGCTC	1 cut(s)	405
SaqAI	TTAA	5 cut(s)	72, 216, 237, 432, 733
SatI	GCNGC	6 cut(s)	132, 341, 344, 584, 600, 603
Sau3AI	GATC	6 cut(s)	262, 354, 390, 423, 499, 518
Sau96I	GGNCC	3 cut(s)	664, 680, 708
ScaI	AGTACT	1 cut(s)	202
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	2 cut(s)	326, 668
SduI	GDGCHC	2 cut(s)	405, 635
SfaNI	GCATC	4 cut(s)	76, 85, 565, 705
SinI	GGWCC	1 cut(s)	708
Sse9I	AATT	3 cut(s)	13, 87, 358
SsiI	CCGC	6 cut(s)	123, 314, 340, 539, 581, 584
SspMI	CTAG	2 cut(s)	204, 705
SstI	GAGCTC	1 cut(s)	405
StyD4I	CCNGG	2 cut(s)	324, 666
StyI	CCWWGG	2 cut(s)	451, 649
TaaI	ACNGT	4 cut(s)	79, 210, 476, 626
TaqI	TCGA	3 cut(s)	308, 389, 521
TasI	AATT	3 cut(s)	13, 87, 358
TatI	WGTACW	1 cut(s)	200
TauI	GCSGC	2 cut(s)	343, 586
Tru1I	TTAA	5 cut(s)	72, 216, 237, 432, 733
Tru9I	TTAA	5 cut(s)	72, 216, 237, 432, 733
TseFI	GTSAC	1 cut(s)	470
TseI	GCWGC	4 cut(s)	131, 343, 599, 602
Tsp45I	GTSAC	1 cut(s)	470
TspDTI	ATGAA	3 cut(s)	38, 159, 173
Van91I	CCANNNNNTGG	1 cut(s)	331
VpaK11BI	GGWCC	1 cut(s)	708
XceI	RCATGY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	656
XmnI	GAANNNNTTC	1 cut(s)	164
XspI	CTAG	2 cut(s)	204, 705
ZrmI	AGTACT	1 cut(s)	202
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.