RchiOBHm_Chr6g0306031

Bark storage protein A-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
64807489 .. 64809320
1832 bp
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UTR
Exon/CDS
Intron
PRQ27505

Sequence Viewer

Length: 363 bp
ATGAGAATTTCAGTAGTAGCTTGGCCTTGCGTAGCTGTTTACGCTATGATCATCAGCTTGATGCTTAAACACACAAATGATGCATTGTCTGCAGATACGCAGAAGTTGATCGACCAGGCCAACAAGAGTGGCCCTTACTTGGGCTTGGTAATTCTGAATTCTTTCGAACTGGACCCTCTTCTTCAATCTCCAAACTTCACTTCAACAAACTTGATCATAGATTTTTCCGGTAAACATACAGAAACCCACTATGAATTTGACTTTCACTGCTTCAAAATCATTCCTTTTACTTTATTTATAGTATGTTTTTCATTTTCTGGGTTTAATTCAAGGAAGGAGATTTCGGTTTGGAACCATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

13.71

Weight (kDa)

6.15

Isoelectric Point (pI)

24.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030398)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0306031
rosa_samantha Rh6AG458500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 6, 157, 254
AfiI CCNNNNNNNGG 2 cut(s) 139, 140
AgsI TTSAA 4 cut(s) 185, 204, 274, 330
AjnI CCWGG 1 cut(s) 114
AjuI GAANNNNNNNTTGG 2 cut(s) 184, 216
AluBI AGCT 3 cut(s) 20, 35, 57
AluI AGCT 3 cut(s) 20, 35, 57
AoxI GGCC 3 cut(s) 23, 117, 130
ApoI RAATTY 3 cut(s) 6, 157, 254
Asp700I GAANNNNTTC 1 cut(s) 161
AspS9I GGNCC 2 cut(s) 131, 172
AsuII TTCGAA 1 cut(s) 165
AvaII GGWCC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 116
BclI TGATCA 2 cut(s) 48, 213
BfmI CTRYAG 1 cut(s) 90
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 172
BmgT120I GGNCC 2 cut(s) 131, 172
BmiI GGNNCC 2 cut(s) 174, 353
BmrFI CCNGG 1 cut(s) 116
BmsI GCATC 2 cut(s) 51, 70
Bpu14I TTCGAA 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 227
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 140
Bse1I ACTGG 1 cut(s) 174
BseBI CCWGG 1 cut(s) 116
BseLI CCNNNNNNNGG 2 cut(s) 139, 140
BseNI ACTGG 1 cut(s) 174
BshFI GGCC 3 cut(s) 25, 119, 132
BsiSI CCGG 1 cut(s) 228
BslI CCNNNNNNNGG 2 cut(s) 139, 140
BsnI GGCC 3 cut(s) 25, 119, 132
Bsp119I TTCGAA 1 cut(s) 165
Bsp143I GATC 3 cut(s) 48, 108, 213
BspANI GGCC 3 cut(s) 25, 119, 132
BspLI GGNNCC 2 cut(s) 174, 353
BspMAI CTGCAG 1 cut(s) 94
BspT104I TTCGAA 1 cut(s) 165
BsrI ACTGG 1 cut(s) 174
BssMI GATC 3 cut(s) 48, 108, 213
Bst2UI CCWGG 1 cut(s) 116
Bst6I CTCTTC 1 cut(s) 183
BstAPI GCANNNNNTGC 1 cut(s) 89
BstBI TTCGAA 1 cut(s) 165
BstKTI GATC 3 cut(s) 51, 111, 216
BstMBI GATC 3 cut(s) 48, 108, 213
BstMWI GCNNNNNNNGC 2 cut(s) 41, 89
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstSFI CTRYAG 1 cut(s) 90
BsuRI GGCC 3 cut(s) 25, 119, 132
BtsI GCAGTG 1 cut(s) 265
BtsIMutI CAGTG 1 cut(s) 265
Cfr13I GGNCC 2 cut(s) 131, 172
CspCI CAANNNNNGTGG 2 cut(s) 109, 144
CviJI RGCY 7 cut(s) 20, 25, 35, 57, 119, 132, 144
CviKI_1 RGCY 7 cut(s) 20, 25, 35, 57, 119, 132, 144
DpnI GATC 3 cut(s) 50, 110, 215
DpnII GATC 3 cut(s) 48, 108, 213
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 172
EcoRI GAATTC 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 114
EcoT22I ATGCAT 1 cut(s) 85
FaiI YATR 6 cut(s) 47, 218, 237, 252, 299, 304
FbaI TGATCA 2 cut(s) 48, 213
HaeIII GGCC 3 cut(s) 25, 119, 132
HapII CCGG 1 cut(s) 228
HpaII CCGG 1 cut(s) 228
Hpy166II GTNNAC 2 cut(s) 40, 233
Hpy188I TCNGA 1 cut(s) 156
Hpy8I GTNNAC 2 cut(s) 40, 233
HpyAV CCTTC 1 cut(s) 328
HpyCH4V TGCA 2 cut(s) 83, 92
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 89
Ksp22I TGATCA 2 cut(s) 48, 213
Kzo9I GATC 3 cut(s) 48, 108, 213
LpnPI CCDG 5 cut(s) 101, 128, 155, 241, 303
LweI GCATC 2 cut(s) 51, 70
MalI GATC 3 cut(s) 50, 110, 215
MboI GATC 3 cut(s) 48, 108, 213
MboII GAAGA 2 cut(s) 170, 173
MluCI AATT 5 cut(s) 6, 150, 157, 254, 325
MnlI CCTC 1 cut(s) 186
Mph1103I ATGCAT 1 cut(s) 85
MroXI GAANNNNTTC 1 cut(s) 161
MseI TTAA 2 cut(s) 66, 324
MslI CAYNNNNRTG 1 cut(s) 75
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 2 cut(s) 41, 89
NdeII GATC 3 cut(s) 48, 108, 213
NlaIV GGNNCC 2 cut(s) 174, 353
NsiI ATGCAT 1 cut(s) 85
NspV TTCGAA 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 161
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 174, 353
PspPI GGNCC 2 cut(s) 131, 172
PstI CTGCAG 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 2 cut(s) 66, 324
Sau3AI GATC 3 cut(s) 48, 108, 213
Sau96I GGNCC 2 cut(s) 131, 172
ScrFI CCNGG 1 cut(s) 116
SetI ASST 3 cut(s) 22, 37, 59
SfaNI GCATC 2 cut(s) 51, 70
SfcI CTRYAG 1 cut(s) 90
SfuI TTCGAA 1 cut(s) 165
SinI GGWCC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 5 cut(s) 6, 150, 157, 254, 325
StyD4I CCNGG 1 cut(s) 114
TaqI TCGA 2 cut(s) 111, 165
TasI AATT 5 cut(s) 6, 150, 157, 254, 325
Tru1I TTAA 2 cut(s) 66, 324
Tru9I TTAA 2 cut(s) 66, 324
TscAI CASTG 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 267, 300
TspRI CASTG 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 172
XapI RAATTY 3 cut(s) 6, 157, 254
XmnI GAANNNNTTC 1 cut(s) 161
Zsp2I ATGCAT 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.