RchiOBHm_Chr6g0308571

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0025077
Physical Location & Seq
Forward (+)
66631219 .. 66631866
648 bp
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UTR
Exon/CDS
Intron
PRQ27747

Sequence Viewer

Length: 648 bp
ATGGATCCTCTGTTTCTCATTCTACTTCTCTCTCTGGCCATCACTCCTCCAACTTCATCTTCAATCTCCGACGCATTGAGTGAAGGGTCATCCCTCTCTGTAGAGAAACCAGAAGATGCTCTGATTTCACCTGGTGGTGTTTTCACCGCCGGCTTTCATCAAGTTGGCAACAACTCATATTGCTTTGCCATTTGGTTCAACAAGCCATCATCATCGTCATCACCAGTCTCCTACCAGAACCGAACTATAGTCTGGATGGCAAATCGTGACCAACCAGTCAACGGGAAGCGTTCAAAGCTCTCCCTCCTCAAAACTGGTAATCTCATCTTAACTGATGCTGCTCAATCCCACGTTTGGACCACAACCACCACCTCAATCTCCCCTGCCCGTTTAAGCCTGCACGACTCCGGTAATCTGGTTCTGCTTAATCTGAAGACGAAGGTTGTTCTATGGCAGAGCTTTGACTCCCCAACTGATACCCTTCTTCCACTCCAACCATTCACCAGAACCGCCATACTTGTCTCCACCAGAAGCCAGAGCAACTTCTCCTCTGGCTTCTATAAGCTCTTTTTCGACAATGATAACCTTCTCCGGCTACTCTTTGACGGCCCTGAGATTTCTAGTGTCTACTGGCCCAACCCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

215

Amino Acids

23.54

Weight (kDa)

6.82

Isoelectric Point (pI)

57.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 82 - 168 4.9e-25 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025077)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0308571 RchiOBHm_Chr6g0308631
rosa_samantha Rh6AG478200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 275
AccI GTMKAC 1 cut(s) 627
AciI CCGC 2 cut(s) 147, 510
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 36
AcuI CTGAAG 1 cut(s) 452
AdeI CACNNNGTG 1 cut(s) 134
AfiI CCNNNNNNNGG 2 cut(s) 281, 354
AgsI TTSAA 3 cut(s) 63, 199, 294
AjnI CCWGG 1 cut(s) 130
AjuI GAANNNNNNNTTGG 2 cut(s) 43, 75
AluBI AGCT 3 cut(s) 298, 459, 565
AluI AGCT 3 cut(s) 298, 459, 565
Alw26I GTCTC 2 cut(s) 232, 526
AlwI GGATC 1 cut(s) 12
AoxI GGCC 3 cut(s) 36, 607, 632
ApeKI GCWGC 1 cut(s) 338
AspS9I GGNCC 3 cut(s) 357, 608, 633
AsuHPI GGTGA 4 cut(s) 120, 136, 213, 493
AvaII GGWCC 1 cut(s) 357
BalI TGGCCA 1 cut(s) 38
BamHI GGATCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 440
BbvI GCAGC 1 cut(s) 325
BccI CCATC 3 cut(s) 47, 214, 250
BceAI ACGGC 1 cut(s) 622
BciT130I CCWGG 1 cut(s) 132
BcoDI GTCTC 2 cut(s) 232, 526
BfaI CTAG 1 cut(s) 621
BfmI CTRYAG 2 cut(s) 99, 246
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
Bme1390I CCNGG 1 cut(s) 132
Bme18I GGWCC 1 cut(s) 357
BmgT120I GGNCC 3 cut(s) 357, 608, 633
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 132
BmsI GCATC 2 cut(s) 106, 325
BpiI GAAGAC 1 cut(s) 440
BsaWI WCCGGW 1 cut(s) 407
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 354
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 4 cut(s) 224, 275, 319, 635
BseBI CCWGG 1 cut(s) 132
BseGI GGATG 2 cut(s) 89, 261
BseLI CCNNNNNNNGG 2 cut(s) 281, 354
BseMII CTCAG 1 cut(s) 603
BseNI ACTGG 4 cut(s) 224, 275, 319, 635
BseRI GAGGAG 3 cut(s) 36, 296, 538
BseXI GCAGC 1 cut(s) 325
BsgI GTGCAG 1 cut(s) 383
BshFI GGCC 3 cut(s) 38, 609, 634
BsiSI CCGG 3 cut(s) 150, 408, 592
BslI CCNNNNNNNGG 2 cut(s) 281, 354
BsmAI GTCTC 2 cut(s) 232, 526
BsnI GGCC 3 cut(s) 38, 609, 634
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 2 cut(s) 147, 510
BspANI GGCC 3 cut(s) 38, 609, 634
BspCNI CTCAG 1 cut(s) 604
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 4 cut(s) 224, 275, 319, 635
BssAI RCCGGY 1 cut(s) 149
BssMI GATC 1 cut(s) 4
Bst2UI CCWGG 1 cut(s) 132
BstC8I GCNNGC 2 cut(s) 151, 398
BstDEI CTNAG 1 cut(s) 612
BstF5I GGATG 2 cut(s) 89, 261
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 2 cut(s) 232, 526
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 295
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 130
BstSFI CTRYAG 2 cut(s) 99, 246
BstV1I GCAGC 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 440
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 3 cut(s) 38, 609, 634
BtsCI GGATG 2 cut(s) 89, 261
Cac8I GCNNGC 2 cut(s) 151, 398
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 3 cut(s) 357, 608, 633
CseI GACGC 1 cut(s) 80
CsiI ACCWGGT 1 cut(s) 130
DdeI CTNAG 1 cut(s) 612
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
DraIII CACNNNGTG 1 cut(s) 134
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
EaeI YGGCCR 1 cut(s) 36
Eco47I GGWCC 1 cut(s) 357
Eco57I CTGAAG 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 130
FaiI YATR 6 cut(s) 178, 248, 451, 515, 561, 646
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 2 cut(s) 76, 268
Fsp4HI GCNGC 1 cut(s) 339
FspBI CTAG 1 cut(s) 621
GluI GCNGC 1 cut(s) 339
HaeIII GGCC 3 cut(s) 38, 609, 634
HapII CCGG 3 cut(s) 150, 408, 592
HgaI GACGC 1 cut(s) 80
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 2 cut(s) 404, 464
HpaII CCGG 3 cut(s) 150, 408, 592
HphI GGTGA 4 cut(s) 120, 136, 213, 493
Hpy166II GTNNAC 2 cut(s) 280, 628
Hpy188I TCNGA 3 cut(s) 70, 123, 432
Hpy188III TCNNGA 2 cut(s) 253, 266
Hpy8I GTNNAC 2 cut(s) 280, 628
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 4 cut(s) 77, 433, 491, 596
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 2 cut(s) 400, 644
HpyF10VI GCNNNNNNNGC 1 cut(s) 295
HpyF3I CTNAG 1 cut(s) 612
HpySE526I ACGT 1 cut(s) 351
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
Kzo9I GATC 1 cut(s) 4
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 2 cut(s) 106, 325
MabI ACCWGGT 1 cut(s) 130
MaeI CTAG 1 cut(s) 621
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 1 cut(s) 266
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 4 cut(s) 51, 125, 445, 476
MflI RGATCY 1 cut(s) 4
MlsI TGGCCA 1 cut(s) 38
MluNI TGGCCA 1 cut(s) 38
MlyI GAGTC 2 cut(s) 398, 458
MmeI TCCRAC 3 cut(s) 74, 93, 517
MnlI CCTC 7 cut(s) 18, 57, 104, 314, 317, 382, 559
Mox20I TGGCCA 1 cut(s) 38
MroNI GCCGGC 1 cut(s) 149
MscI TGGCCA 1 cut(s) 38
MseI TTAA 3 cut(s) 329, 392, 426
Msp20I TGGCCA 1 cut(s) 38
MspI CCGG 3 cut(s) 150, 408, 592
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 295
NaeI GCCGGC 1 cut(s) 151
NdeII GATC 1 cut(s) 4
NgoMIV GCCGGC 1 cut(s) 149
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 266
PdiI GCCGGC 1 cut(s) 151
PkrI GCNGC 1 cut(s) 340
PleI GAGTC 2 cut(s) 398, 458
PpsI GAGTC 2 cut(s) 398, 458
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 3 cut(s) 357, 608, 633
PsuI RGATCY 1 cut(s) 4
SaqAI TTAA 3 cut(s) 329, 392, 426
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 3 cut(s) 357, 608, 633
SchI GAGTC 2 cut(s) 398, 458
ScrFI CCNGG 1 cut(s) 132
SetI ASST 8 cut(s) 133, 300, 354, 374, 444, 461, 567, 588
SexAI ACCWGGT 1 cut(s) 130
SfaNI GCATC 2 cut(s) 106, 325
SfcI CTRYAG 2 cut(s) 99, 246
SinI GGWCC 1 cut(s) 357
SsiI CCGC 2 cut(s) 147, 510
SspMI CTAG 1 cut(s) 621
StyD4I CCNGG 1 cut(s) 130
TaiI ACGT 1 cut(s) 354
TaqI TCGA 1 cut(s) 573
Tru1I TTAA 3 cut(s) 329, 392, 426
Tru9I TTAA 3 cut(s) 329, 392, 426
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 2 cut(s) 45, 146
VpaK11BI GGWCC 1 cut(s) 357
XmiI GTMKAC 1 cut(s) 627
XspI CTAG 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.