RchiOBHm_Chr6g0308631

Receptor protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0025077
Physical Location & Seq
Forward (+)
66668288 .. 66668935
648 bp
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UTR
Exon/CDS
Intron
PRQ27752

Sequence Viewer

Length: 648 bp
ATGGATCCTCTGTTTCTCATTCTACTTCTCTTTCTGGCCATCACTTCTCCAACTTCATCTTCAACCTCCGACGCATTGAGTGAAGGCTCATCCCTCTCTGTAGAGAAACCAGAAGATGTTCTGATTTCACCTGCTGGTGTTTTCACTGCCGGCTTTCATCAAGTTGGCAACAACTCGTATTGCTATGCCATTTGGTTCAATGAGCCATCATCATCGTCATCACCAGTCTCCTACCAGAACCGAACTATAGTCTGGATGGCAAATCGTGACCAACCAGTCAACGGGAAGCGCTCAAAGCTCTCCCTCCTCAAAACTGGTAATCTCATCTTAACTGATGCTGCTCAATCCAACGTTTGGACCACAGCCACCACCTCAATCTCCCCTGCCCGTTTAAGCCTGCACTACTCCGGTAATCTGGTTCTGCTTAATCTGAAGACGAAGGTTGTTCTATGGCAGAGCTTTGACTCCCCAACTGACACCCTTCTTCCACTCCAACCATTCACCAGAACCGCCATACTTGTCTCCTCCAGAAGCCAGAGCAACTTCTCCTCTGGCTTCTATAAGCTCTTCTTCGACAATGATAACCTTCTCCGGCTACTCTTTGACGACCCTGAGATTTCTAGTGTCTACTGGCCCAACCATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

215

Amino Acids

23.78

Weight (kDa)

5.86

Isoelectric Point (pI)

62.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 82 - 168 3.9e-23 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025077)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0308571 RchiOBHm_Chr6g0308631
rosa_samantha Rh6AG478200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 139
AasI GACNNNNNNGTC 1 cut(s) 275
Acc36I ACCTGC 1 cut(s) 139
AccB7I CCANNNNNTGG 1 cut(s) 354
AccI GTMKAC 1 cut(s) 627
AciI CCGC 1 cut(s) 510
AclI AACGTT 1 cut(s) 351
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 36
AcuI CTGAAG 1 cut(s) 452
AfeI AGCGCT 1 cut(s) 290
AfiI CCNNNNNNNGG 2 cut(s) 281, 354
AgsI TTSAA 2 cut(s) 63, 199
AjuI GAANNNNNNNTTGG 2 cut(s) 43, 75
AluBI AGCT 3 cut(s) 298, 459, 565
AluI AGCT 3 cut(s) 298, 459, 565
Alw26I GTCTC 2 cut(s) 232, 526
AlwI GGATC 1 cut(s) 12
Aor51HI AGCGCT 1 cut(s) 290
AoxI GGCC 2 cut(s) 36, 632
ApeKI GCWGC 1 cut(s) 338
Asp700I GAANNNNTTC 1 cut(s) 117
AspLEI GCGC 1 cut(s) 291
AspS9I GGNCC 2 cut(s) 357, 633
AsuHPI GGTGA 3 cut(s) 120, 213, 493
AvaII GGWCC 1 cut(s) 357
BalI TGGCCA 1 cut(s) 38
BamHI GGATCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 440
BbvI GCAGC 1 cut(s) 325
BccI CCATC 3 cut(s) 47, 214, 250
BcoDI GTCTC 2 cut(s) 232, 526
BfaI CTAG 1 cut(s) 621
BfmI CTRYAG 2 cut(s) 99, 246
BfoI RGCGCY 1 cut(s) 292
BfuAI ACCTGC 1 cut(s) 139
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
Bme18I GGWCC 1 cut(s) 357
BmgT120I GGNCC 2 cut(s) 357, 633
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 325
BpiI GAAGAC 1 cut(s) 440
BpmI CTGGAG 1 cut(s) 511
BsaWI WCCGGW 1 cut(s) 407
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 354
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 4 cut(s) 224, 275, 319, 635
BseGI GGATG 2 cut(s) 89, 261
BseLI CCNNNNNNNGG 2 cut(s) 281, 354
BseMII CTCAG 1 cut(s) 603
BseNI ACTGG 4 cut(s) 224, 275, 319, 635
BseRI GAGGAG 3 cut(s) 296, 514, 538
BseXI GCAGC 1 cut(s) 325
BsgI GTGCAG 1 cut(s) 383
BshFI GGCC 2 cut(s) 38, 634
BsiSI CCGG 3 cut(s) 150, 408, 592
BslI CCNNNNNNNGG 2 cut(s) 281, 354
BsmAI GTCTC 2 cut(s) 232, 526
BsnI GGCC 2 cut(s) 38, 634
Bsp143I GATC 1 cut(s) 4
BspACI CCGC 1 cut(s) 510
BspANI GGCC 2 cut(s) 38, 634
BspCNI CTCAG 1 cut(s) 604
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 139
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 572
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 4 cut(s) 224, 275, 319, 635
BssAI RCCGGY 1 cut(s) 149
BssMI GATC 1 cut(s) 4
Bst6I CTCTTC 1 cut(s) 572
BstC8I GCNNGC 2 cut(s) 151, 398
BstDEI CTNAG 1 cut(s) 612
BstF5I GGATG 2 cut(s) 89, 261
BstH2I RGCGCY 1 cut(s) 292
BstHHI GCGC 1 cut(s) 291
BstKTI GATC 1 cut(s) 7
BstMAI GTCTC 2 cut(s) 232, 526
BstMBI GATC 1 cut(s) 4
BstMWI GCNNNNNNNGC 1 cut(s) 295
BstSFI CTRYAG 2 cut(s) 99, 246
BstV1I GCAGC 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 440
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 2 cut(s) 38, 634
BtsCI GGATG 2 cut(s) 89, 261
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 144
BveI ACCTGC 1 cut(s) 139
Cac8I GCNNGC 2 cut(s) 151, 398
CfoI GCGC 1 cut(s) 291
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 2 cut(s) 357, 633
CseI GACGC 1 cut(s) 80
DdeI CTNAG 1 cut(s) 612
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
DrdI GACNNNNNNGTC 1 cut(s) 275
DseDI GACNNNNNNGTC 1 cut(s) 275
EaeI YGGCCR 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 572
EarI CTCTTC 1 cut(s) 572
Eco47I GGWCC 1 cut(s) 357
Eco47III AGCGCT 1 cut(s) 290
Eco57I CTGAAG 1 cut(s) 452
FaiI YATR 7 cut(s) 186, 248, 451, 515, 561, 642, 644
FalI AAGNNNNNCTT 2 cut(s) 554, 586
FauNDI CATATG 1 cut(s) 642
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 2 cut(s) 76, 268
Fsp4HI GCNGC 1 cut(s) 339
FspBI CTAG 1 cut(s) 621
GlaI GCGC 1 cut(s) 290
GluI GCNGC 1 cut(s) 339
GsuI CTGGAG 1 cut(s) 511
HaeII RGCGCY 1 cut(s) 292
HaeIII GGCC 2 cut(s) 38, 634
HapII CCGG 3 cut(s) 150, 408, 592
HgaI GACGC 1 cut(s) 80
HhaI GCGC 1 cut(s) 291
Hin6I GCGC 1 cut(s) 289
HinP1I GCGC 1 cut(s) 289
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 1 cut(s) 464
HpaII CCGG 3 cut(s) 150, 408, 592
HphI GGTGA 3 cut(s) 120, 213, 493
Hpy166II GTNNAC 2 cut(s) 280, 628
Hpy188I TCNGA 3 cut(s) 70, 123, 432
Hpy188III TCNNGA 3 cut(s) 253, 266, 528
Hpy8I GTNNAC 2 cut(s) 280, 628
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 4 cut(s) 77, 433, 491, 596
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 1 cut(s) 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 295
HpyF3I CTNAG 1 cut(s) 612
HpySE526I ACGT 1 cut(s) 351
HspAI GCGC 1 cut(s) 289
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
Kzo9I GATC 1 cut(s) 4
LguI GCTCTTC 1 cut(s) 572
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 1 cut(s) 325
MaeI CTAG 1 cut(s) 621
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 1 cut(s) 266
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MboII GAAGA 6 cut(s) 51, 125, 445, 476, 559, 562
MflI RGATCY 1 cut(s) 4
MlsI TGGCCA 1 cut(s) 38
MluNI TGGCCA 1 cut(s) 38
MlyI GAGTC 1 cut(s) 458
MmeI TCCRAC 4 cut(s) 74, 93, 372, 517
MnlI CCTC 8 cut(s) 18, 76, 104, 314, 317, 382, 535, 559
Mox20I TGGCCA 1 cut(s) 38
MroNI GCCGGC 1 cut(s) 149
MroXI GAANNNNTTC 1 cut(s) 117
MscI TGGCCA 1 cut(s) 38
MseI TTAA 3 cut(s) 329, 392, 426
Msp20I TGGCCA 1 cut(s) 38
MspI CCGG 3 cut(s) 150, 408, 592
MwoI GCNNNNNNNGC 1 cut(s) 295
NaeI GCCGGC 1 cut(s) 151
NdeI CATATG 1 cut(s) 642
NdeII GATC 1 cut(s) 4
NgoMIV GCCGGC 1 cut(s) 149
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 266
PaqCI CACCTGC 1 cut(s) 139
PciSI GCTCTTC 1 cut(s) 572
PdiI GCCGGC 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 117
PflMI CCANNNNNTGG 1 cut(s) 354
PkrI GCNGC 1 cut(s) 340
PleI GAGTC 1 cut(s) 458
PpsI GAGTC 1 cut(s) 458
Psp1406I AACGTT 1 cut(s) 351
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 357, 633
PsuI RGATCY 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 572
SaqAI TTAA 3 cut(s) 329, 392, 426
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 2 cut(s) 357, 633
SchI GAGTC 1 cut(s) 458
SetI ASST 9 cut(s) 68, 133, 300, 354, 374, 444, 461, 567, 588
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 2 cut(s) 99, 246
SinI GGWCC 1 cut(s) 357
SsiI CCGC 1 cut(s) 510
SspMI CTAG 1 cut(s) 621
TaiI ACGT 1 cut(s) 354
TaqI TCGA 1 cut(s) 573
Tru1I TTAA 3 cut(s) 329, 392, 426
Tru9I TTAA 3 cut(s) 329, 392, 426
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 1 cut(s) 266
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 1 cut(s) 266
TspDTI ATGAA 2 cut(s) 45, 146
TspRI CASTG 1 cut(s) 151
Van91I CCANNNNNTGG 1 cut(s) 354
VpaK11BI GGWCC 1 cut(s) 357
XmiI GTMKAC 1 cut(s) 627
XmnI GAANNNNTTC 1 cut(s) 117
XspI CTAG 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.