RchiOBHm_Chr6g0308691

receptor protein kinase ZmPK1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0030344
Physical Location & Seq
Forward (+)
66758108 .. 66758503
396 bp
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UTR
Exon/CDS
Intron
PRQ27758

Sequence Viewer

Length: 396 bp
ATGGCCAACCGTGACCAACCGGTCAACGGTCACCACTCCAAGCTCTCCCTCCCGAGAAACGGCAACCTTATTCTCACCGATGCTGGCAAATCCATCTTTTGGTCCTCCAACACCGTCTCAAATTCATTAGTCCAATTGCTCCTCCACGACACTGGCAATCTTGTCCTGCTCGCCAGTGACAGTGTCGTTTTATGGGAAAGCTTTGCTTCACCAACGAACACTCTTTTGCCTTATCAGCCACTAACAAGGAACACCAAGAGCTCGTATCTTCTAGAAGCCTCACCAACTCCTCCTCCGGCCTCTACAAGCTCTTTTTCGATAATGACAACACCCTCCAGCTTCTCTACAATGGACCCGAAGTTTCGAGTATTTACTAGCCTGACCCTTGGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_1 PAN_2 Pkinase S_locus_glycop

Protein Analysis

131

Amino Acids

14.23

Weight (kDa)

8.16

Isoelectric Point (pI)

34.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 1 - 87 6.8e-20 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030344)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr6g0308691
rosa_samantha Rh6AG478700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 20
AccB7I CCANNNNNTGG 1 cut(s) 99
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 121
AfiI CCNNNNNNNGG 3 cut(s) 26, 59, 99
AgeI ACCGGT 1 cut(s) 19
AluBI AGCT 5 cut(s) 43, 201, 261, 309, 339
AluI AGCT 5 cut(s) 43, 201, 261, 309, 339
Alw21I GWGCWC 1 cut(s) 263
Alw26I GTCTC 1 cut(s) 121
Ama87I CYCGRG 1 cut(s) 52
AoxI GGCC 2 cut(s) 3, 297
ApoI RAATTY 1 cut(s) 121
AsiGI ACCGGT 1 cut(s) 19
AspS9I GGNCC 2 cut(s) 102, 352
AsuHPI GGTGA 4 cut(s) 23, 67, 201, 273
AvaI CYCGRG 1 cut(s) 52
AvaII GGWCC 2 cut(s) 102, 352
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 263
BccI CCATC 1 cut(s) 101
BceAI ACGGC 1 cut(s) 76
BcoDI GTCTC 1 cut(s) 121
BfaI CTAG 2 cut(s) 272, 375
Bme18I GGWCC 2 cut(s) 102, 352
BmeT110I CYCGRG 1 cut(s) 52
BmgT120I GGNCC 2 cut(s) 102, 352
BmiI GGNNCC 1 cut(s) 354
BmsI GCATC 1 cut(s) 70
BpmI CTGGAG 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 385
BsaWI WCCGGW 1 cut(s) 19
BsaXI ACNNNNNCTCC 2 cut(s) 277, 307
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 59, 99
Bse118I RCCGGY 1 cut(s) 19
Bse1I ACTGG 2 cut(s) 157, 174
BseDI CCNNGG 1 cut(s) 385
BseLI CCNNNNNNNGG 3 cut(s) 26, 59, 99
BseNI ACTGG 2 cut(s) 157, 174
BseRI GAGGAG 3 cut(s) 131, 279, 282
BshFI GGCC 2 cut(s) 5, 299
BshTI ACCGGT 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 263
BsiHKCI CYCGRG 1 cut(s) 52
BsiSI CCGG 2 cut(s) 20, 296
BslI CCNNNNNNNGG 3 cut(s) 26, 59, 99
BsmAI GTCTC 1 cut(s) 121
BsmBI CGTCTC 1 cut(s) 121
BsnI GGCC 2 cut(s) 5, 299
BsoBI CYCGRG 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 263
BspANI GGCC 2 cut(s) 5, 299
BspLI GGNNCC 1 cut(s) 354
BsrFI RCCGGY 1 cut(s) 19
BsrI ACTGG 2 cut(s) 157, 174
BssAI RCCGGY 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 385
BssT1I CCWWGG 1 cut(s) 385
Bst4CI ACNGT 4 cut(s) 11, 29, 115, 182
BstC8I GCNNGC 2 cut(s) 85, 171
BstEII GGTNACC 1 cut(s) 29
BstMAI GTCTC 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 235
BstPI GGTNACC 1 cut(s) 29
BstXI CCANNNNNNTGG 1 cut(s) 152
BsuRI GGCC 2 cut(s) 5, 299
BtsIMutI CAGTG 3 cut(s) 150, 181, 187
Cac8I GCNNGC 2 cut(s) 85, 171
Cfr10I RCCGGY 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 102, 352
CspAI ACCGGT 1 cut(s) 19
DrdI GACNNNNNNGTC 1 cut(s) 20
DseDI GACNNNNNNGTC 1 cut(s) 20
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 385
Eco24I GRGCYC 1 cut(s) 263
Eco47I GGWCC 2 cut(s) 102, 352
Eco53kI GAGCTC 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 52
Eco91I GGTNACC 1 cut(s) 29
EcoICRI GAGCTC 1 cut(s) 261
EcoO65I GGTNACC 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 385
EcoT38I GRGCYC 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 385
Esp3I CGTCTC 1 cut(s) 121
FaiI YATR 1 cut(s) 193
FalI AAGNNNNNCTT 2 cut(s) 190, 222
FriOI GRGCYC 1 cut(s) 263
FspBI CTAG 2 cut(s) 272, 375
GsuI CTGGAG 1 cut(s) 319
HaeIII GGCC 2 cut(s) 5, 299
HapII CCGG 2 cut(s) 20, 296
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HindIII AAGCTT 1 cut(s) 199
HpaII CCGG 2 cut(s) 20, 296
HphI GGTGA 4 cut(s) 23, 67, 201, 273
Hpy166II GTNNAC 1 cut(s) 25
Hpy188III TCNNGA 2 cut(s) 52, 272
Hpy8I GTNNAC 1 cut(s) 25
HpyCH4III ACNGT 4 cut(s) 11, 29, 115, 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 235
LmnI GCTCC 1 cut(s) 144
LpnPI CCDG 8 cut(s) 33, 69, 138, 179, 187, 309, 349, 392
LweI GCATC 1 cut(s) 70
MaeI CTAG 2 cut(s) 272, 375
MaeIII GTNAC 3 cut(s) 11, 29, 176
MboII GAAGA 1 cut(s) 260
MfeI CAATTG 1 cut(s) 134
MhlI GDGCHC 1 cut(s) 263
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 121, 134
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 132
MnlI CCTC 8 cut(s) 59, 115, 152, 289, 300, 303, 310, 343
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 2 cut(s) 20, 296
MunI CAATTG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 235
NlaIV GGNNCC 1 cut(s) 354
NmuCI GTSAC 3 cut(s) 11, 29, 176
PflFI GACNNNGTC 1 cut(s) 182
PflMI CCANNNNNTGG 1 cut(s) 99
PinAI ACCGGT 1 cut(s) 19
Psp124BI GAGCTC 1 cut(s) 263
PspEI GGTNACC 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 354
PspPI GGNCC 2 cut(s) 102, 352
PsyI GACNNNGTC 1 cut(s) 182
SacI GAGCTC 1 cut(s) 263
Sau96I GGNCC 2 cut(s) 102, 352
SduI GDGCHC 1 cut(s) 263
SetI ASST 6 cut(s) 45, 69, 203, 263, 311, 341
SfaNI GCATC 1 cut(s) 70
SinI GGWCC 2 cut(s) 102, 352
Sse9I AATT 2 cut(s) 121, 134
SspMI CTAG 2 cut(s) 272, 375
SstI GAGCTC 1 cut(s) 263
StyI CCWWGG 1 cut(s) 385
TaaI ACNGT 4 cut(s) 11, 29, 115, 182
TaqI TCGA 2 cut(s) 317, 364
TasI AATT 2 cut(s) 121, 134
TscAI CASTG 3 cut(s) 157, 181, 187
TseFI GTSAC 3 cut(s) 11, 29, 176
Tsp45I GTSAC 3 cut(s) 11, 29, 176
TspDTI ATGAA 1 cut(s) 114
TspRI CASTG 3 cut(s) 157, 181, 187
Tth111I GACNNNGTC 1 cut(s) 182
Van91I CCANNNNNTGG 1 cut(s) 99
VpaK11BI GGWCC 2 cut(s) 102, 352
XapI RAATTY 1 cut(s) 121
XbaI TCTAGA 1 cut(s) 271
XspI CTAG 2 cut(s) 272, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.