RchiOBHm_Chr6g0311821

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0029900
Physical Location & Seq
Forward (+)
68670743 .. 68671157
415 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28046

Sequence Viewer

Length: 252 bp
ATGAAGGTGATCGTTGCATATTTGCTCGCTGTGTTGGGTGGCAAGACCAGCCCTAGAATCTGCCGAAGACATCCTTGGCGCCGGAGCTTTCTGTTCAGAGTTTTCAGTTTAGTTCGTGGGTATGTTGGGATGTGGGTATCAGTTCGTGCCAATGTCGGGAGACAGTTTGCAAGGGAGGCATTGCAGATTTGCAGGTTCTTATCCTTCGTAGTTAGTTGTATGAGAATGCATTACTTGTCTGCTGCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.61

Weight (kDa)

11.72

Isoelectric Point (pI)

52.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029900)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0085011 RchiOBHm_Chr6g0311821

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 183
AccB1I GGYRCC 1 cut(s) 78
AcyI GRCGYC 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 156
AjuI GAANNNNNNNTTGG 2 cut(s) 58, 90
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
Alw26I GTCTC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 242
AspLEI GCGC 1 cut(s) 81
AsuHPI GGTGA 1 cut(s) 19
BanI GGYRCC 1 cut(s) 78
BbsI GAAGAC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 229
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 54
BfoI RGCGCY 1 cut(s) 82
BfuAI ACCTGC 1 cut(s) 183
BisI GCNGC 1 cut(s) 243
BlsI GCNGC 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 80
BpiI GAAGAC 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 74
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse3DI GCAATG 1 cut(s) 179
BseDI CCNNGG 1 cut(s) 74
BseGI GGATG 2 cut(s) 70, 135
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMI GCAATG 1 cut(s) 179
BseXI GCAGC 1 cut(s) 229
BshNI GGYRCC 1 cut(s) 78
BsiSI CCGG 1 cut(s) 82
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 154
BsmI GAATGC 1 cut(s) 231
Bsp143I GATC 1 cut(s) 9
BspLI GGNNCC 1 cut(s) 80
BspMI ACCTGC 1 cut(s) 183
BspT107I GGYRCC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 1 cut(s) 9
BssNI GRCGYC 1 cut(s) 79
BssT1I CCWWGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 79
BstC8I GCNNGC 1 cut(s) 27
BstF5I GGATG 2 cut(s) 70, 135
BstH2I RGCGCY 1 cut(s) 82
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 1 cut(s) 12
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 2 cut(s) 48, 176
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 73
BtsCI GGATG 2 cut(s) 70, 135
BveI ACCTGC 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 27
CfoI GCGC 1 cut(s) 81
CviJI RGCY 2 cut(s) 51, 87
CviKI_1 RGCY 2 cut(s) 51, 87
DinI GGCGCC 1 cut(s) 80
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 74
EcoT14I CCWWGG 1 cut(s) 74
EcoT22I ATGCAT 1 cut(s) 231
EgeI GGCGCC 1 cut(s) 80
EheI GGCGCC 1 cut(s) 80
ErhI CCWWGG 1 cut(s) 74
FaiI YATR 3 cut(s) 19, 123, 221
FalI AAGNNNNNCTT 2 cut(s) 58, 90
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 2 cut(s) 57, 142
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 1 cut(s) 54
GlaI GCGC 1 cut(s) 80
GluI GCNGC 1 cut(s) 243
HaeII RGCGCY 1 cut(s) 82
HapII CCGG 1 cut(s) 82
HhaI GCGC 1 cut(s) 81
Hin1I GRCGYC 1 cut(s) 79
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HinfI GANTC 1 cut(s) 57
HpaII CCGG 1 cut(s) 82
HphI GGTGA 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 98
Hpy188III TCNNGA 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 214
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4V TGCA 6 cut(s) 17, 170, 184, 192, 229, 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 176
Hsp92I GRCGYC 1 cut(s) 79
HspAI GCGC 1 cut(s) 79
KasI GGCGCC 1 cut(s) 78
Kzo9I GATC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 84
LpnPI CCDG 3 cut(s) 61, 95, 178
Lsp1109I GCAGC 1 cut(s) 229
MaeI CTAG 1 cut(s) 54
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 1 cut(s) 78
Mly113I GGCGCC 1 cut(s) 79
MnlI CCTC 1 cut(s) 169
Mph1103I ATGCAT 1 cut(s) 231
MseI TTAA 1 cut(s) 250
MspI CCGG 1 cut(s) 82
Mva1269I GAATGC 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 48, 176
NarI GGCGCC 1 cut(s) 79
NdeII GATC 1 cut(s) 9
NlaIV GGNNCC 1 cut(s) 80
NsiI ATGCAT 1 cut(s) 231
PctI GAATGC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 57
PkrI GCNGC 1 cut(s) 244
PluTI GGCGCC 1 cut(s) 82
PspN4I GGNNCC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 250
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 1 cut(s) 9
SetI ASST 3 cut(s) 9, 89, 197
SfoI GGCGCC 1 cut(s) 80
SspDI GGCGCC 1 cut(s) 78
SspMI CTAG 1 cut(s) 54
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 1 cut(s) 165
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 1 cut(s) 250
Tru9I TTAA 1 cut(s) 250
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 1 cut(s) 17
XspI CTAG 1 cut(s) 54
Zsp2I ATGCAT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.