Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030382

Physical Location & Seq

Genomic Coordinates Forward (+)

69436677 .. 69438290

Gene Structure 1614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28148

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAGGACATGGAGTCCGAGCGTGAAAGATTGTTTAGTCTCCCAACTGACCAAAAAAATGAAGGCCTTAAGATCTCCAGGCGGGGAGTACAGGATACGGCATCGCCCATATATGCAGTCCTTGTTTTCCACCACCATTTGAACTCTTACCCTCCATCCCCTGAACCAACTCGGACCTTGGGTCTAGCTGGGCCCTCACACAGACACCTCCATGGCTCCATTGTAACCATACTCCGAGCTAAAACCAGCGGTCTCCAAGTCTTCAAAGACGGAGTTGGGTGGATTCCGGTGGAACCGAAAAACGATGCACTCATTGTGAACCTTGGTGATTTCACCCGCATTCTATCCAATGGTCGATTTATCAGTGTTCTTCATCGTGTAGTGGTGAAACCTGTTGGAGTTGTTGCTTGTCAGTTAAGTTTGTTTAGAGTTTGTCTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

147

Amino Acids

16.31

Weight (kDa)

9.39

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
2OG-FeII_Oxy	PF03171	42 - 130	5.3e-18	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0030382)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0312871
rosa_multiflora	Rmu_sc0008049.1_g000022

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	82, 249, 337
AfaI	GTAC	1 cut(s)	90
AflII	CTTAAG	1 cut(s)	68
AgsI	TTSAA	2 cut(s)	142, 265
AhdI	GACNNNNNGTC	2 cut(s)	13, 180
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	2 cut(s)	188, 239
AluI	AGCT	2 cut(s)	188, 239
Alw26I	GTCTC	3 cut(s)	44, 257, 440
AoxI	GGCC	2 cut(s)	64, 191
ApaI	GGGCCC	1 cut(s)	195
AspS9I	GGNCC	3 cut(s)	174, 191, 192
AsuHPI	GGTGA	3 cut(s)	325, 338, 397
AvaII	GGWCC	1 cut(s)	174
BaeGI	GKGCMC	1 cut(s)	195
BanII	GRGCYC	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	253
BccI	CCATC	1 cut(s)	163
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	79
BciVI	GTATCC	1 cut(s)	88
BcoDI	GTCTC	3 cut(s)	44, 257, 440
BfaI	CTAG	1 cut(s)	185
BfrI	CTTAAG	1 cut(s)	68
BfuI	GTATCC	1 cut(s)	88
BglII	AGATCT	1 cut(s)	72
Bme1390I	CCNGG	1 cut(s)	79
Bme18I	GGWCC	1 cut(s)	174
BmeRI	GACNNNNNGTC	2 cut(s)	13, 180
BmgT120I	GGNCC	3 cut(s)	174, 191, 192
BmiI	GGNNCC	3 cut(s)	193, 217, 294
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	2 cut(s)	110, 295
BpiI	GAAGAC	1 cut(s)	253
BplI	GAGNNNNNCTC	1 cut(s)	420
BpmI	CTGGAG	1 cut(s)	61
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	3 cut(s)	177, 211, 322
BsaWI	WCCGGW	1 cut(s)	286
BseBI	CCWGG	1 cut(s)	79
BseDI	CCNNGG	3 cut(s)	177, 211, 322
BseGI	GGATG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	195
BseYI	CCCAGC	1 cut(s)	188
BshFI	GGCC	2 cut(s)	66, 193
BsiSI	CCGG	1 cut(s)	287
BsmAI	GTCTC	3 cut(s)	44, 257, 440
BsmI	GAATGC	1 cut(s)	339
BsnI	GGCC	2 cut(s)	66, 193
Bso31I	GGTCTC	1 cut(s)	257
Bsp120I	GGGCCC	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	72
Bsp19I	CCATGG	1 cut(s)	211
BspACI	CCGC	3 cut(s)	82, 249, 337
BspANI	GGCC	2 cut(s)	66, 193
BspLI	GGNNCC	3 cut(s)	193, 217, 294
BspTI	CTTAAG	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	257
BssECI	CCNNGG	3 cut(s)	177, 211, 322
BssMI	GATC	1 cut(s)	72
BssT1I	CCWWGG	3 cut(s)	177, 211, 322
Bst2UI	CCWGG	1 cut(s)	79
BstAFI	CTTAAG	1 cut(s)	68
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	155
BstKTI	GATC	1 cut(s)	75
BstMAI	GTCTC	3 cut(s)	44, 257, 440
BstMBI	GATC	1 cut(s)	72
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	77
BstSLI	GKGCMC	1 cut(s)	195
BstV2I	GAAGAC	1 cut(s)	253
BstX2I	RGATCY	1 cut(s)	72
BstYI	RGATCY	1 cut(s)	72
BsuI	GTATCC	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	66, 193
BtgI	CCRYGG	1 cut(s)	211
BtgZI	GCGATG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	370
Cfr13I	GGNCC	3 cut(s)	174, 191, 192
Csp6I	GTAC	1 cut(s)	89
CviAII	CATG	2 cut(s)	10, 212
CviJI	RGCY	5 cut(s)	66, 188, 193, 216, 239
CviKI_1	RGCY	5 cut(s)	66, 188, 193, 216, 239
CviQI	GTAC	1 cut(s)	89
DpnI	GATC	1 cut(s)	74
DpnII	GATC	1 cut(s)	72
DriI	GACNNNNNGTC	2 cut(s)	13, 180
Eam1105I	GACNNNNNGTC	2 cut(s)	13, 180
Eco130I	CCWWGG	3 cut(s)	177, 211, 322
Eco147I	AGGCCT	1 cut(s)	66
Eco24I	GRGCYC	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	174
EcoO109I	RGGNCCY	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	77
EcoT14I	CCWWGG	3 cut(s)	177, 211, 322
EcoT38I	GRGCYC	1 cut(s)	195
ErhI	CCWWGG	3 cut(s)	177, 211, 322
FaeI	CATG	2 cut(s)	13, 215
FaiI	YATR	6 cut(s)	11, 110, 112, 114, 213, 230
FatI	CATG	2 cut(s)	9, 211
FauI	CCCGC	2 cut(s)	75, 344
FokI	GGATG	1 cut(s)	142
FriOI	GRGCYC	1 cut(s)	195
FspBI	CTAG	1 cut(s)	185
GsaI	CCCAGC	1 cut(s)	192
GsuI	CTGGAG	1 cut(s)	61
HaeIII	GGCC	2 cut(s)	66, 193
HapII	CCGG	1 cut(s)	287
Hin1II	CATG	2 cut(s)	13, 215
HinfI	GANTC	2 cut(s)	14, 283
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	3 cut(s)	325, 338, 397
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	3 cut(s)	19, 174, 236
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	116, 308
Hsp92II	CATG	2 cut(s)	13, 215
Kzo9I	GATC	1 cut(s)	72
LmnI	GCTCC	1 cut(s)	221
LpnPI	CCDG	8 cut(s)	64, 77, 91, 174, 174, 259, 300, 405
LweI	GCATC	2 cut(s)	110, 295
MaeI	CTAG	1 cut(s)	185
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	1 cut(s)	74
MboI	GATC	1 cut(s)	72
MboII	GAAGA	2 cut(s)	253, 362
MflI	RGATCY	1 cut(s)	72
MhlI	GDGCHC	1 cut(s)	195
MlyI	GAGTC	1 cut(s)	23
MmeI	TCCRAC	1 cut(s)	376
MnlI	CCTC	3 cut(s)	162, 205, 218
MseI	TTAA	2 cut(s)	69, 416
MslI	CAYNNNNRTG	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	249
MspCI	CTTAAG	1 cut(s)	68
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	79
Mva1269I	GAATGC	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	79
NcoI	CCATGG	1 cut(s)	211
NdeII	GATC	1 cut(s)	72
NlaIII	CATG	2 cut(s)	13, 215
NlaIV	GGNNCC	3 cut(s)	193, 217, 294
PceI	AGGCCT	1 cut(s)	66
PctI	GAATGC	1 cut(s)	339
PfeI	GAWTC	1 cut(s)	283
PleI	GAGTC	1 cut(s)	22
PpsI	GAGTC	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	77
PspN4I	GGNNCC	3 cut(s)	193, 217, 294
PspOMI	GGGCCC	1 cut(s)	191
PspPI	GGNCC	3 cut(s)	174, 191, 192
PsuI	RGATCY	1 cut(s)	72
RsaI	GTAC	1 cut(s)	90
RsaNI	GTAC	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	210
SaqAI	TTAA	2 cut(s)	69, 416
Sau3AI	GATC	1 cut(s)	72
Sau96I	GGNCC	3 cut(s)	174, 191, 192
SchI	GAGTC	1 cut(s)	23
ScrFI	CCNGG	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	195
SetI	ASST	6 cut(s)	179, 190, 210, 241, 324, 394
SfaNI	GCATC	2 cut(s)	110, 295
SinI	GGWCC	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
SseBI	AGGCCT	1 cut(s)	66
SsiI	CCGC	3 cut(s)	82, 249, 337
SspMI	CTAG	1 cut(s)	185
StuI	AGGCCT	1 cut(s)	66
StyD4I	CCNGG	1 cut(s)	77
StyI	CCWWGG	3 cut(s)	177, 211, 322
TaqI	TCGA	1 cut(s)	355
TatI	WGTACW	1 cut(s)	88
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	2 cut(s)	69, 416
Tru9I	TTAA	2 cut(s)	69, 416
TscAI	CASTG	1 cut(s)	370
TspDTI	ATGAA	2 cut(s)	75, 362
TspGWI	ACGGA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	370
Vha464I	CTTAAG	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	174
XspI	CTAG	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.