Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008049.1

Orthogroup ID

OG0030382

Physical Location & Seq

Genomic Coordinates Forward (+)

90097 .. 90399

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008049.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atgatccaactaacagcagtggctgcaatctggctttacatgcagttgaactcttaccctccatcccctgaaccaactcggaccttgggtctagctgggcccgcacacagacacctccatggctccattgtaaccatactccgagctaaaaccagcggtctccaagtcttcaaagacggagttgggtggattccggtggaaccgaaaaacgatgcactcattgtgaaccttggtgatttcacccgcattctatccaatggtcgatttatcagtgctcttcatcgtgtagtggtgaaaccgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009987 GO:0010033 GO:0010114 GO:0010476 GO:0010817 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0016707 GO:0019752 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00904 ko01110 map00904 map01110

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

100

Amino Acids

10.95

Weight (kDa)

10.27

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030382)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0312871
rosa_multiflora	Rmu_sc0008049.1_g000022

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	102, 156, 244
AgsI	TTSAA	2 cut(s)	49, 172
AhdI	GACNNNNNGTC	1 cut(s)	87
AluBI	AGCT	2 cut(s)	95, 146
AluI	AGCT	2 cut(s)	95, 146
Alw21I	GWGCWC	1 cut(s)	277
Alw26I	GTCTC	1 cut(s)	164
AlwNI	CAGNNNCTG	1 cut(s)	23
AoxI	GGCC	1 cut(s)	98
ApaI	GGGCCC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	23
AspS9I	GGNCC	3 cut(s)	81, 98, 99
AsuHPI	GGTGA	2 cut(s)	232, 245
AvaII	GGWCC	1 cut(s)	81
BaeGI	GKGCMC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	277
BbvI	GCAGC	1 cut(s)	10
BccI	CCATC	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	92
BisI	GCNGC	1 cut(s)	24
BlsI	GCNGC	1 cut(s)	25
Bme18I	GGWCC	1 cut(s)	81
BmeRI	GACNNNNNGTC	1 cut(s)	87
BmgT120I	GGNCC	3 cut(s)	81, 98, 99
BmiI	GGNNCC	3 cut(s)	100, 124, 201
BmsI	GCATC	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	160
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	3 cut(s)	84, 118, 229
BsaWI	WCCGGW	1 cut(s)	193
BseDI	CCNNGG	3 cut(s)	84, 118, 229
BseGI	GGATG	1 cut(s)	62
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	10
BseYI	CCCAGC	1 cut(s)	95
BshFI	GGCC	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	246
BsnI	GGCC	1 cut(s)	100
Bso31I	GGTCTC	1 cut(s)	164
Bsp120I	GGGCCC	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	102, 277
Bsp143I	GATC	1 cut(s)	3
Bsp19I	CCATGG	1 cut(s)	118
BspACI	CCGC	3 cut(s)	102, 156, 244
BspANI	GGCC	1 cut(s)	100
BspLI	GGNNCC	3 cut(s)	100, 124, 201
BspQI	GCTCTTC	1 cut(s)	282
BspTNI	GGTCTC	1 cut(s)	164
BssECI	CCNNGG	3 cut(s)	84, 118, 229
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	3 cut(s)	84, 118, 229
Bst4CI	ACNGT	1 cut(s)	300
Bst6I	CTCTTC	1 cut(s)	282
BstAPI	GCANNNNNTGC	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	62
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 40, 101
BstNSI	RCATGY	1 cut(s)	43
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	10
BstV2I	GAAGAC	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	100
BtgI	CCRYGG	1 cut(s)	118
BtsCI	GGATG	1 cut(s)	62
BtsI	GCAGTG	1 cut(s)	24
BtsIMutI	CAGTG	2 cut(s)	24, 277
Cac8I	GCNNGC	1 cut(s)	102
CaiI	CAGNNNCTG	1 cut(s)	23
Cfr13I	GGNCC	3 cut(s)	81, 98, 99
CviAII	CATG	2 cut(s)	40, 119
CviJI	RGCY	6 cut(s)	23, 34, 95, 100, 123, 146
CviKI_1	RGCY	6 cut(s)	23, 34, 95, 100, 123, 146
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DriI	GACNNNNNGTC	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	282
Eam1105I	GACNNNNNGTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	282
Eco130I	CCWWGG	3 cut(s)	84, 118, 229
Eco24I	GRGCYC	1 cut(s)	102
Eco31I	GGTCTC	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	81
EcoT14I	CCWWGG	3 cut(s)	84, 118, 229
EcoT38I	GRGCYC	1 cut(s)	102
ErhI	CCWWGG	3 cut(s)	84, 118, 229
FaeI	CATG	2 cut(s)	43, 122
FaiI	YATR	3 cut(s)	41, 120, 137
FatI	CATG	2 cut(s)	39, 118
FauI	CCCGC	2 cut(s)	109, 251
Fnu4HI	GCNGC	1 cut(s)	24
FokI	GGATG	1 cut(s)	49
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	24
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	1 cut(s)	24
GsaI	CCCAGC	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	1 cut(s)	194
Hin1II	CATG	2 cut(s)	43, 122
HinfI	GANTC	1 cut(s)	190
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	2 cut(s)	232, 245
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	81, 143
Hpy8I	GTNNAC	1 cut(s)	226
HpyCH4III	ACNGT	1 cut(s)	300
HpyCH4V	TGCA	3 cut(s)	26, 43, 215
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 40, 101
Hsp92II	CATG	2 cut(s)	43, 122
Kzo9I	GATC	1 cut(s)	3
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	128
LpnPI	CCDG	5 cut(s)	16, 81, 81, 166, 207
Lsp1109I	GCAGC	1 cut(s)	10
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	1 cut(s)	92
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	2 cut(s)	160, 269
MhlI	GDGCHC	2 cut(s)	102, 277
MmeI	TCCRAC	1 cut(s)	31
MnlI	CCTC	2 cut(s)	69, 125
MslI	CAYNNNNRTG	1 cut(s)	117
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	1 cut(s)	194
Mva1269I	GAATGC	1 cut(s)	246
MwoI	GCNNNNNNNGC	3 cut(s)	23, 40, 101
NcoI	CCATGG	1 cut(s)	118
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	43, 122
NlaIV	GGNNCC	3 cut(s)	100, 124, 201
NspI	RCATGY	1 cut(s)	43
PciSI	GCTCTTC	1 cut(s)	282
PctI	GAATGC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	190
PkrI	GCNGC	1 cut(s)	25
PspFI	CCCAGC	1 cut(s)	95
PspN4I	GGNNCC	3 cut(s)	100, 124, 201
PspOMI	GGGCCC	1 cut(s)	98
PspPI	GGNCC	3 cut(s)	81, 98, 99
PstNI	CAGNNNCTG	1 cut(s)	23
RseI	CAYNNNNRTG	1 cut(s)	117
SapI	GCTCTTC	1 cut(s)	282
SatI	GCNGC	1 cut(s)	24
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	3 cut(s)	81, 98, 99
SduI	GDGCHC	2 cut(s)	102, 277
SetI	ASST	5 cut(s)	86, 97, 117, 148, 231
SfaNI	GCATC	1 cut(s)	202
SinI	GGWCC	1 cut(s)	81
SmiMI	CAYNNNNRTG	1 cut(s)	117
SsiI	CCGC	3 cut(s)	102, 156, 244
SspMI	CTAG	1 cut(s)	92
StyI	CCWWGG	3 cut(s)	84, 118, 229
TaaI	ACNGT	1 cut(s)	300
TaqI	TCGA	1 cut(s)	262
TfiI	GAWTC	1 cut(s)	190
TscAI	CASTG	2 cut(s)	24, 277
TseI	GCWGC	1 cut(s)	23
TspDTI	ATGAA	1 cut(s)	269
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	2 cut(s)	24, 277
VpaK11BI	GGWCC	1 cut(s)	81
XceI	RCATGY	1 cut(s)	43
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.