Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0019036

Physical Location & Seq

Genomic Coordinates Forward (+)

2201474 .. 2202103

Gene Structure 630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16066

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAACCACAAGCCCAACAACCAACGGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGCAGTTCTACCATGCATTGCAGGCGGAGCAGTACCAGGTGGGCGCCTACTACAGATCAAATAAGAATCCTCAAGGAGTTTTATGAAAATGGAGGTAAGAACCCAACTCCAGAGCAGGTTGAGAGGATCACTCTCCAGTTGAAACAGTACGGACAGGTCGAGAACAAGAACGTCTTTTATTGGTTCCAAAACCACAAGTCTCGGGAGAGGCAGAAGAAGAAGTTAACTTCGGATGTTCATGTGCCCATGCAAGTATCAGGGCTTGTTGGTGGATCCATTAATCTCAATTTTGGGTCAACTTGTTCTGCTGGTGTTGATGGATCGATTAATCTCAATTTTGGGTTAACTTGTCCTGCTGGTGTTGGTGGATCCATCATGGAACAACGAGGAGAAGATCACCAGGAGATTGAAACCCTTCCACTATTCCCCATGCATGGTGAGGAAATATGTGGCAACATGAAGACTACTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

176

Amino Acids

19.42

Weight (kDa)

6.52

Isoelectric Point (pI)

56.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	31 - 90	1.8e-12	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0019036)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0180191
rosa_multiflora	Rmu_sc0000235.1_g000032 Rmu_sc0001291.1_g000045 Rmu_sc0002451.1_g000034 Rmu_sc0002557.1_g000012
rosa_rugosa	Rorug02G0268300 Rorug03G0290900 Rorug04G0003400.1 Rorug05G0164000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	163
AccB1I	GGYRCC	1 cut(s)	100
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	6 cut(s)	191, 324, 337, 385, 420, 433
AcyI	GRCGYC	1 cut(s)	101
AfaI	GTAC	2 cut(s)	91, 206
AfiI	CCNNNNNNNGG	1 cut(s)	491
AgsI	TTSAA	2 cut(s)	199, 467
AjnI	CCWGG	2 cut(s)	92, 456
Alw26I	GTCTC	1 cut(s)	261
AlwI	GGATC	6 cut(s)	191, 324, 337, 385, 420, 433
Ama87I	CYCGRG	1 cut(s)	258
ApeKI	GCWGC	1 cut(s)	50
AseI	ATTAAT	2 cut(s)	336, 384
Asp700I	GAANNNNTTC	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	103
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	446, 506
AvaI	CYCGRG	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	303
BamHI	GGATCC	2 cut(s)	329, 425
BanI	GGYRCC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	524
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	3 cut(s)	26, 368, 437
BciT130I	CCWGG	2 cut(s)	94, 458
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	261
BfaI	CTAG	1 cut(s)	529
BfmI	CTRYAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	104
BfuAI	ACCTGC	1 cut(s)	163
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	3 cut(s)	55, 94, 458
BmeT110I	CYCGRG	1 cut(s)	258
BmiI	GGNNCC	5 cut(s)	6, 102, 242, 331, 427
BmrFI	CCNGG	3 cut(s)	55, 94, 458
BpiI	GAAGAC	1 cut(s)	524
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
BpmI	CTGGAG	2 cut(s)	150, 176
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	55
Bsa29I	ATCGAT	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	1 cut(s)	491
Bse1I	ACTGG	1 cut(s)	193
Bse3DI	GCAATG	1 cut(s)	73
BseBI	CCWGG	2 cut(s)	94, 458
BseCI	ATCGAT	1 cut(s)	380
BseGI	GGATG	2 cut(s)	37, 295
BseLI	CCNNNNNNNGG	1 cut(s)	491
BseMI	GCAATG	1 cut(s)	73
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	459
BseSI	GKGCMC	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	62
BshNI	GGYRCC	1 cut(s)	100
BshVI	ATCGAT	1 cut(s)	380
BsiHKCI	CYCGRG	1 cut(s)	258
BsiSI	CCGG	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	491
BsmAI	GTCTC	1 cut(s)	261
BsoBI	CYCGRG	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	303
Bsp143I	GATC	6 cut(s)	112, 183, 329, 377, 425, 451
BspACI	CCGC	1 cut(s)	82
BspDI	ATCGAT	1 cut(s)	380
BspLI	GGNNCC	5 cut(s)	6, 102, 242, 331, 427
BspMI	ACCTGC	1 cut(s)	163
BspPI	GGATC	6 cut(s)	191, 324, 337, 385, 420, 433
BspT107I	GGYRCC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	193
BssMI	GATC	6 cut(s)	112, 183, 329, 377, 425, 451
BssNI	GRCGYC	1 cut(s)	101
Bst2UI	CCWGG	2 cut(s)	94, 458
Bst4CI	ACNGT	1 cut(s)	204
BstACI	GRCGYC	1 cut(s)	101
BstC8I	GCNNGC	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	37, 295
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	6 cut(s)	115, 186, 332, 380, 428, 454
BstMAI	GTCTC	1 cut(s)	261
BstMBI	GATC	6 cut(s)	112, 183, 329, 377, 425, 451
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 84
BstNI	CCWGG	2 cut(s)	94, 458
BstSCI	CCNGG	3 cut(s)	53, 92, 456
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	1 cut(s)	524
BstX2I	RGATCY	2 cut(s)	329, 425
BstYI	RGATCY	2 cut(s)	329, 425
Bsu15I	ATCGAT	1 cut(s)	380
BsuTUI	ATCGAT	1 cut(s)	380
BtsCI	GGATG	2 cut(s)	37, 295
BveI	ACCTGC	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	80
CfoI	GCGC	1 cut(s)	103
ClaI	ATCGAT	1 cut(s)	380
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	90, 205
CviAII	CATG	7 cut(s)	70, 296, 304, 433, 487, 491, 514
CviJI	RGCY	3 cut(s)	14, 53, 319
CviKI_1	RGCY	3 cut(s)	14, 53, 319
CviQI	GTAC	2 cut(s)	90, 205
DinI	GGCGCC	1 cut(s)	102
DpnI	GATC	6 cut(s)	114, 185, 331, 379, 427, 453
DpnII	GATC	6 cut(s)	112, 183, 329, 377, 425, 451
EciI	GGCGGA	1 cut(s)	97
Eco88I	CYCGRG	1 cut(s)	258
EcoRII	CCWGG	2 cut(s)	92, 456
EcoT22I	ATGCAT	2 cut(s)	75, 492
EgeI	GGCGCC	1 cut(s)	102
EheI	GGCGCC	1 cut(s)	102
FaeI	CATG	7 cut(s)	73, 299, 307, 436, 490, 494, 517
FaiI	YATR	9 cut(s)	71, 141, 297, 305, 434, 488, 492, 505, 515
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	7 cut(s)	69, 295, 303, 432, 486, 490, 513
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	2 cut(s)	44, 302
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	529
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	1 cut(s)	51
GsuI	CTGGAG	2 cut(s)	150, 176
HaeII	RGCGCY	1 cut(s)	104
HapII	CCGG	1 cut(s)	54
HhaI	GCGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	7 cut(s)	73, 299, 307, 436, 490, 494, 517
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HincII	GTYRAC	3 cut(s)	282, 354, 402
HindII	GTYRAC	3 cut(s)	282, 354, 402
HinfI	GANTC	1 cut(s)	123
HpaI	GTTAAC	2 cut(s)	282, 402
HpaII	CCGG	1 cut(s)	54
HphI	GGTGA	2 cut(s)	446, 506
Hpy166II	GTNNAC	3 cut(s)	282, 354, 402
Hpy188I	TCNGA	1 cut(s)	289
Hpy188III	TCNNGA	3 cut(s)	167, 217, 260
Hpy8I	GTNNAC	3 cut(s)	282, 354, 402
HpyAV	CCTTC	1 cut(s)	482
HpyCH4III	ACNGT	1 cut(s)	204
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	4 cut(s)	73, 78, 307, 490
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 84
HpySE526I	ACGT	1 cut(s)	228
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	7 cut(s)	73, 299, 307, 436, 490, 494, 517
HspAI	GCGC	1 cut(s)	101
KasI	GGCGCC	1 cut(s)	100
KspAI	GTTAAC	2 cut(s)	282, 402
Kzo9I	GATC	6 cut(s)	112, 183, 329, 377, 425, 451
LmnI	GCTCC	2 cut(s)	57, 84
Lsp1109I	GCAGC	1 cut(s)	62
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	1 cut(s)	529
MaeII	ACGT	1 cut(s)	228
MalI	GATC	6 cut(s)	114, 185, 331, 379, 427, 453
MboI	GATC	6 cut(s)	112, 183, 329, 377, 425, 451
MboII	GAAGA	4 cut(s)	283, 286, 461, 529
MflI	RGATCY	2 cut(s)	329, 425
MhlI	GDGCHC	1 cut(s)	303
MluCI	AATT	2 cut(s)	343, 391
Mly113I	GGCGCC	1 cut(s)	101
MnlI	CCTC	8 cut(s)	22, 29, 137, 143, 174, 258, 437, 490
Mph1103I	ATGCAT	2 cut(s)	75, 492
MroXI	GAANNNNTTC	1 cut(s)	471
MseI	TTAA	4 cut(s)	281, 336, 384, 401
MspI	CCGG	1 cut(s)	54
MspR9I	CCNGG	3 cut(s)	55, 94, 458
MvaI	CCWGG	2 cut(s)	94, 458
MwoI	GCNNNNNNNGC	2 cut(s)	79, 84
NarI	GGCGCC	1 cut(s)	101
NciI	CCSGG	1 cut(s)	55
NdeII	GATC	6 cut(s)	112, 183, 329, 377, 425, 451
NlaIII	CATG	7 cut(s)	73, 299, 307, 436, 490, 494, 517
NlaIV	GGNNCC	5 cut(s)	6, 102, 242, 331, 427
NsiI	ATGCAT	2 cut(s)	75, 492
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	471
PfeI	GAWTC	1 cut(s)	123
PkrI	GCNGC	1 cut(s)	52
PluTI	GGCGCC	1 cut(s)	104
PshBI	ATTAAT	2 cut(s)	336, 384
Psp6I	CCWGG	2 cut(s)	92, 456
PspGI	CCWGG	2 cut(s)	92, 456
PspN4I	GGNNCC	5 cut(s)	6, 102, 242, 331, 427
PsuI	RGATCY	2 cut(s)	329, 425
RsaI	GTAC	2 cut(s)	91, 206
RsaNI	GTAC	2 cut(s)	90, 205
SaqAI	TTAA	4 cut(s)	281, 336, 384, 401
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	6 cut(s)	112, 183, 329, 377, 425, 451
ScrFI	CCNGG	3 cut(s)	55, 94, 458
SduI	GDGCHC	1 cut(s)	303
SetI	ASST	5 cut(s)	98, 154, 177, 216, 231
SexAI	ACCWGGT	1 cut(s)	92
SfcI	CTRYAG	1 cut(s)	108
SfoI	GGCGCC	1 cut(s)	102
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	343, 391
SsiI	CCGC	1 cut(s)	82
SspDI	GGCGCC	1 cut(s)	100
SspMI	CTAG	1 cut(s)	529
StyD4I	CCNGG	3 cut(s)	53, 92, 456
TaaI	ACNGT	1 cut(s)	204
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	2 cut(s)	216, 380
TasI	AATT	2 cut(s)	343, 391
TfiI	GAWTC	1 cut(s)	123
Tru1I	TTAA	4 cut(s)	281, 336, 384, 401
Tru9I	TTAA	4 cut(s)	281, 336, 384, 401
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	3 cut(s)	156, 284, 530
TspGWI	ACGGA	2 cut(s)	41, 222
VspI	ATTAAT	2 cut(s)	336, 384
XmnI	GAANNNNTTC	1 cut(s)	471
XspI	CTAG	1 cut(s)	529
Zsp2I	ATGCAT	2 cut(s)	75, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.