Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002451.1

Orthogroup ID

OG0019036

Physical Location & Seq

Genomic Coordinates Reverse (-)

142009 .. 142560

Gene Structure 552 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002451.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

atggaaccacaaacccagcaaccaacggaggatggaggaagcaacaaagcagccgggagcagtgctaacatgcattgcaagcggagcagtacctggtgggctcctactacagatcagataagaatcctcaaggagctttatgacaagggagttacgtacccaactccagagcaggttcagaggatcactctccagctgaaacggtacggacagattgagaacaagaacgtcttttattggttccagaaccacaagtctcgggagaggcagaagaagaagttaacttcggatgttcatgtgcccatgagaactaattctactgatgccggtggatccattagtctcaattttgggtcaactagttctacgggtgttggtggatccattaatctcaattttgggtcaactagtgctactggtgttggtggatccattcatgtcaattttgggtcaactagttctactttcatggaacagcgaggagaagatcaccaggagattgaaacccttccactgttccccatgcatggtgagacatatgtggcaacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

183

Amino Acids

20.21

Weight (kDa)

7.89

Isoelectric Point (pI)

49.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019036)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0180191
rosa_multiflora	Rmu_sc0000235.1_g000032 Rmu_sc0001291.1_g000045 Rmu_sc0002451.1_g000034 Rmu_sc0002557.1_g000012
rosa_rugosa	Rorug02G0268300 Rorug03G0290900 Rorug04G0003400.1 Rorug05G0164000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	163
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	7 cut(s)	191, 327, 340, 375, 388, 423, 436
AfaI	GTAC	3 cut(s)	91, 158, 206
AfiI	CCNNNNNNNGG	1 cut(s)	527
AgsI	TTSAA	1 cut(s)	503
AhlI	ACTAGT	3 cut(s)	359, 407, 455
AjnI	CCWGG	2 cut(s)	92, 492
AluBI	AGCT	2 cut(s)	136, 196
AluI	AGCT	2 cut(s)	136, 196
Alw26I	GTCTC	3 cut(s)	261, 347, 527
AlwI	GGATC	7 cut(s)	191, 327, 340, 375, 388, 423, 436
AlwNI	CAGNNNCTG	1 cut(s)	93
Ama87I	CYCGRG	1 cut(s)	258
ApeKI	GCWGC	1 cut(s)	50
AseI	ATTAAT	1 cut(s)	387
Asp700I	GAANNNNTTC	2 cut(s)	313, 507
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	482, 542
AvaI	CYCGRG	1 cut(s)	258
BaeGI	GKGCMC	1 cut(s)	303
BamHI	GGATCC	3 cut(s)	332, 380, 428
BanII	GRGCYC	1 cut(s)	103
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	26
BciT130I	CCWGG	2 cut(s)	94, 494
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	3 cut(s)	261, 347, 527
BcuI	ACTAGT	3 cut(s)	359, 407, 455
BfaI	CTAG	3 cut(s)	360, 408, 456
BfmI	CTRYAG	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	163
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	3 cut(s)	55, 94, 494
BmeT110I	CYCGRG	1 cut(s)	258
BmiI	GGNNCC	6 cut(s)	6, 102, 242, 334, 382, 430
BmrFI	CCNGG	3 cut(s)	55, 94, 494
BmsI	GCATC	1 cut(s)	313
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
BpmI	CTGGAG	2 cut(s)	150, 176
BpuEI	CTTGAG	1 cut(s)	113
BpuMI	CCSGG	1 cut(s)	55
BsaAI	YACGTR	1 cut(s)	156
BsaBI	GATNNNNATC	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	1 cut(s)	527
Bse118I	RCCGGY	1 cut(s)	326
Bse1I	ACTGG	1 cut(s)	421
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	122
BseBI	CCWGG	2 cut(s)	94, 494
BseGI	GGATG	2 cut(s)	37, 295
BseJI	GATNNNNATC	1 cut(s)	122
BseLI	CCNNNNNNNGG	1 cut(s)	527
BseMI	GCAATG	1 cut(s)	73
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	495
BseSI	GKGCMC	1 cut(s)	303
BseXI	GCAGC	1 cut(s)	62
BseYI	CCCAGC	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	258
BsiSI	CCGG	2 cut(s)	54, 327
BslI	CCNNNNNNNGG	1 cut(s)	527
BsmAI	GTCTC	3 cut(s)	261, 347, 527
BsoBI	CYCGRG	1 cut(s)	258
Bsp1286I	GDGCHC	2 cut(s)	103, 303
Bsp143I	GATC	6 cut(s)	112, 183, 332, 380, 428, 487
BspACI	CCGC	1 cut(s)	82
BspLI	GGNNCC	6 cut(s)	6, 102, 242, 334, 382, 430
BspMI	ACCTGC	1 cut(s)	163
BspPI	GGATC	7 cut(s)	191, 327, 340, 375, 388, 423, 436
BsrDI	GCAATG	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	326
BsrI	ACTGG	1 cut(s)	421
BssAI	RCCGGY	1 cut(s)	326
BssMI	GATC	6 cut(s)	112, 183, 332, 380, 428, 487
Bst2UI	CCWGG	2 cut(s)	94, 494
Bst4CI	ACNGT	2 cut(s)	204, 516
BstBAI	YACGTR	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	37, 295
BstKTI	GATC	6 cut(s)	115, 186, 335, 383, 431, 490
BstMAI	GTCTC	3 cut(s)	261, 347, 527
BstMBI	GATC	6 cut(s)	112, 183, 332, 380, 428, 487
BstMWI	GCNNNNNNNGC	2 cut(s)	79, 84
BstNI	CCWGG	2 cut(s)	94, 494
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	3 cut(s)	53, 92, 492
BstSFI	CTRYAG	1 cut(s)	108
BstSLI	GKGCMC	1 cut(s)	303
BstSNI	TACGTA	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	62
BstX2I	RGATCY	3 cut(s)	332, 380, 428
BstYI	RGATCY	3 cut(s)	332, 380, 428
BtsCI	GGATG	2 cut(s)	37, 295
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	67, 512
BveI	ACCTGC	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	80
CaiI	CAGNNNCTG	1 cut(s)	93
Cfr10I	RCCGGY	1 cut(s)	326
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	3 cut(s)	90, 157, 205
CviAII	CATG	8 cut(s)	70, 296, 304, 437, 469, 523, 527, 549
CviJI	RGCY	4 cut(s)	53, 101, 136, 196
CviKI_1	RGCY	4 cut(s)	53, 101, 136, 196
CviQI	GTAC	3 cut(s)	90, 157, 205
DpnI	GATC	6 cut(s)	114, 185, 334, 382, 430, 489
DpnII	GATC	6 cut(s)	112, 183, 332, 380, 428, 487
Eco105I	TACGTA	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	258
EcoRII	CCWGG	2 cut(s)	92, 492
EcoT22I	ATGCAT	2 cut(s)	75, 528
EcoT38I	GRGCYC	1 cut(s)	103
FaeI	CATG	8 cut(s)	73, 299, 307, 440, 472, 526, 530, 552
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	8 cut(s)	69, 295, 303, 436, 468, 522, 526, 548
FauNDI	CATATG	1 cut(s)	538
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	2 cut(s)	44, 302
FriOI	GRGCYC	1 cut(s)	103
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	3 cut(s)	360, 408, 456
GluI	GCNGC	1 cut(s)	51
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	150, 176
HapII	CCGG	2 cut(s)	54, 327
Hin1II	CATG	8 cut(s)	73, 299, 307, 440, 472, 526, 530, 552
HincII	GTYRAC	4 cut(s)	282, 357, 405, 453
HindII	GTYRAC	4 cut(s)	282, 357, 405, 453
HinfI	GANTC	1 cut(s)	123
HpaI	GTTAAC	1 cut(s)	282
HpaII	CCGG	2 cut(s)	54, 327
HphI	GGTGA	2 cut(s)	482, 542
Hpy166II	GTNNAC	4 cut(s)	282, 357, 405, 453
Hpy188I	TCNGA	3 cut(s)	117, 180, 289
Hpy188III	TCNNGA	3 cut(s)	167, 244, 260
Hpy8I	GTNNAC	4 cut(s)	282, 357, 405, 453
HpyAV	CCTTC	1 cut(s)	518
HpyCH4III	ACNGT	2 cut(s)	204, 516
HpyCH4IV	ACGT	2 cut(s)	155, 228
HpyCH4V	TGCA	3 cut(s)	73, 78, 526
HpyF10VI	GCNNNNNNNGC	2 cut(s)	79, 84
HpySE526I	ACGT	2 cut(s)	155, 228
Hsp92II	CATG	8 cut(s)	73, 299, 307, 440, 472, 526, 530, 552
KspAI	GTTAAC	1 cut(s)	282
Kzo9I	GATC	6 cut(s)	112, 183, 332, 380, 428, 487
LmnI	GCTCC	4 cut(s)	57, 84, 106, 133
Lsp1109I	GCAGC	1 cut(s)	62
LweI	GCATC	1 cut(s)	313
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	3 cut(s)	360, 408, 456
MaeII	ACGT	2 cut(s)	155, 228
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	6 cut(s)	114, 185, 334, 382, 430, 489
MboI	GATC	6 cut(s)	112, 183, 332, 380, 428, 487
MboII	GAAGA	3 cut(s)	283, 286, 497
MflI	RGATCY	3 cut(s)	332, 380, 428
MhlI	GDGCHC	2 cut(s)	103, 303
MluCI	AATT	4 cut(s)	313, 346, 394, 442
MnlI	CCTC	6 cut(s)	22, 29, 137, 174, 258, 473
Mph1103I	ATGCAT	2 cut(s)	75, 528
MroXI	GAANNNNTTC	2 cut(s)	313, 507
MseI	TTAA	2 cut(s)	281, 387
MspA1I	CMGCKG	1 cut(s)	196
MspI	CCGG	2 cut(s)	54, 327
MspR9I	CCNGG	3 cut(s)	55, 94, 494
MvaI	CCWGG	2 cut(s)	94, 494
MwoI	GCNNNNNNNGC	2 cut(s)	79, 84
NciI	CCSGG	1 cut(s)	55
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	6 cut(s)	112, 183, 332, 380, 428, 487
NlaIII	CATG	8 cut(s)	73, 299, 307, 440, 472, 526, 530, 552
NlaIV	GGNNCC	6 cut(s)	6, 102, 242, 334, 382, 430
NsiI	ATGCAT	2 cut(s)	75, 528
NspI	RCATGY	1 cut(s)	73
PdmI	GAANNNNTTC	2 cut(s)	313, 507
PfeI	GAWTC	1 cut(s)	123
PkrI	GCNGC	1 cut(s)	52
Ppu21I	YACGTR	1 cut(s)	156
PshBI	ATTAAT	1 cut(s)	387
Psp6I	CCWGG	2 cut(s)	92, 492
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	2 cut(s)	92, 492
PspN4I	GGNNCC	6 cut(s)	6, 102, 242, 334, 382, 430
PsrI	GAACNNNNNNTAC	2 cut(s)	301, 333
PstNI	CAGNNNCTG	1 cut(s)	93
PsuI	RGATCY	3 cut(s)	332, 380, 428
PvuII	CAGCTG	1 cut(s)	196
RsaI	GTAC	3 cut(s)	91, 158, 206
RsaNI	GTAC	3 cut(s)	90, 157, 205
SaqAI	TTAA	2 cut(s)	281, 387
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	6 cut(s)	112, 183, 332, 380, 428, 487
ScrFI	CCNGG	3 cut(s)	55, 94, 494
SduI	GDGCHC	2 cut(s)	103, 303
SetI	ASST	6 cut(s)	95, 138, 158, 177, 198, 231
SexAI	ACCWGGT	1 cut(s)	92
SfaNI	GCATC	1 cut(s)	313
SfcI	CTRYAG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
SnaBI	TACGTA	1 cut(s)	156
SpeI	ACTAGT	3 cut(s)	359, 407, 455
Sse9I	AATT	4 cut(s)	313, 346, 394, 442
SsiI	CCGC	1 cut(s)	82
SspMI	CTAG	3 cut(s)	360, 408, 456
StyD4I	CCNGG	3 cut(s)	53, 92, 492
TaaI	ACNGT	2 cut(s)	204, 516
TaiI	ACGT	2 cut(s)	158, 231
TasI	AATT	4 cut(s)	313, 346, 394, 442
TfiI	GAWTC	1 cut(s)	123
Tru1I	TTAA	2 cut(s)	281, 387
Tru9I	TTAA	2 cut(s)	281, 387
TscAI	CASTG	2 cut(s)	67, 519
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	3 cut(s)	284, 425, 457
TspGWI	ACGGA	2 cut(s)	41, 222
TspRI	CASTG	2 cut(s)	67, 519
VspI	ATTAAT	1 cut(s)	387
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	2 cut(s)	313, 507
XspI	CTAG	3 cut(s)	360, 408, 456
Zsp2I	ATGCAT	2 cut(s)	75, 528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.