Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030531

Physical Location & Seq

Genomic Coordinates Reverse (-)

3701261 .. 3702441

Gene Structure 1181 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16279

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCTTCTTCAATTGCGAGACGTGCCCTAATTCCAGAGGACTCTCCAAGCTTCTGCATTAAGATTGTCACTGATAATGACCTCCGAGATGGGAAGGAACTTCCCGAGATGGCTGTAAACATATATCGAAACTGTATGGAAGACTCTATATTCCTCAAGGTACCAAATTATGAGACATTATGGCCAATTGAAGTGAAAAAATCAGCTCATGGTGGCCGAATGTGGTTGCACAAGGGATGGCAAGAGTTTGCCAACTTTTACTCACTAGAGCAAGGATACTTGGTATTTGTGATGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

99

Amino Acids

11.5

Weight (kDa)

5.62

Isoelectric Point (pI)

58.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030531)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0182481 RchiOBHm_Chr7g0182521

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	298
Acc65I	GGTACC	1 cut(s)	160
AccB1I	GGYRCC	1 cut(s)	160
AcoI	YGGCCR	2 cut(s)	182, 214
AfaI	GTAC	1 cut(s)	162
AgsI	TTSAA	2 cut(s)	12, 191
AjiI	CACGTC	1 cut(s)	23
AluBI	AGCT	2 cut(s)	51, 206
AluI	AGCT	2 cut(s)	51, 206
Alw26I	GTCTC	2 cut(s)	13, 167
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	2 cut(s)	182, 214
Asp718I	GGTACC	1 cut(s)	160
AvaI	CYCGRG	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	28
BalI	TGGCCA	1 cut(s)	184
BanI	GGYRCC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	147
BccI	CCATC	3 cut(s)	83, 103, 231
BciVI	GTATCC	1 cut(s)	269
BcoDI	GTCTC	2 cut(s)	13, 167
BfaI	CTAG	1 cut(s)	266
BfuI	GTATCC	1 cut(s)	269
BmeT110I	CYCGRG	1 cut(s)	104
BmgBI	CACGTC	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	162
BpiI	GAAGAC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	140
BseGI	GGATG	1 cut(s)	242
BseSI	GKGCMC	1 cut(s)	28
BshFI	GGCC	2 cut(s)	184, 216
BshNI	GGYRCC	1 cut(s)	160
BsiHKCI	CYCGRG	1 cut(s)	104
BsmAI	GTCTC	2 cut(s)	13, 167
BsmBI	CGTCTC	1 cut(s)	13
BsnI	GGCC	2 cut(s)	184, 216
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	28
BspANI	GGCC	2 cut(s)	184, 216
BspLI	GGNNCC	1 cut(s)	162
BspT107I	GGYRCC	1 cut(s)	160
Bst4CI	ACNGT	1 cut(s)	134
BstF5I	GGATG	1 cut(s)	242
BstMAI	GTCTC	2 cut(s)	13, 167
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstSLI	GKGCMC	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	147
BsuI	GTATCC	1 cut(s)	269
BsuRI	GGCC	2 cut(s)	184, 216
BtrI	CACGTC	1 cut(s)	23
BtsCI	GGATG	1 cut(s)	242
BtsIMutI	CAGTG	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	161
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	6 cut(s)	5, 51, 113, 184, 206, 216
CviKI_1	RGCY	6 cut(s)	5, 51, 113, 184, 206, 216
CviQI	GTAC	1 cut(s)	161
EaeI	YGGCCR	2 cut(s)	182, 214
Eco88I	CYCGRG	1 cut(s)	104
Esp3I	CGTCTC	1 cut(s)	13
FaeI	CATG	1 cut(s)	212
FaiI	YATR	8 cut(s)	122, 124, 137, 149, 171, 181, 210, 298
FatI	CATG	1 cut(s)	208
FokI	GGATG	1 cut(s)	249
FspBI	CTAG	1 cut(s)	266
HaeIII	GGCC	2 cut(s)	184, 216
Hin1II	CATG	1 cut(s)	212
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	2 cut(s)	41, 143
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	2 cut(s)	35, 104
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	1 cut(s)	88
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	2 cut(s)	57, 229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	1 cut(s)	212
KpnI	GGTACC	1 cut(s)	164
LpnPI	CCDG	1 cut(s)	48
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	1 cut(s)	67
MboII	GAAGA	1 cut(s)	152
MfeI	CAATTG	2 cut(s)	12, 186
MhlI	GDGCHC	1 cut(s)	28
MlsI	TGGCCA	1 cut(s)	184
MluCI	AATT	4 cut(s)	12, 30, 166, 186
MluNI	TGGCCA	1 cut(s)	184
MlyI	GAGTC	2 cut(s)	35, 137
MnlI	CCTC	3 cut(s)	31, 92, 164
Mox20I	TGGCCA	1 cut(s)	184
MscI	TGGCCA	1 cut(s)	184
MseI	TTAA	1 cut(s)	60
Msp20I	TGGCCA	1 cut(s)	184
MunI	CAATTG	2 cut(s)	12, 186
MwoI	GCNNNNNNNGC	1 cut(s)	23
NlaIII	CATG	1 cut(s)	212
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	67
PleI	GAGTC	2 cut(s)	35, 137
PpsI	GAGTC	2 cut(s)	35, 137
PsiI	TTATAA	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	162
RsaI	GTAC	1 cut(s)	162
RsaNI	GTAC	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	60
SchI	GAGTC	2 cut(s)	35, 137
SduI	GDGCHC	1 cut(s)	28
SetI	ASST	5 cut(s)	25, 53, 84, 162, 208
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	4 cut(s)	12, 30, 166, 186
SspMI	CTAG	1 cut(s)	266
TaaI	ACNGT	1 cut(s)	134
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	127
TasI	AATT	4 cut(s)	12, 30, 166, 186
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	1 cut(s)	76
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
TspRI	CASTG	1 cut(s)	76
XspI	CTAG	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.