Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030531

Physical Location & Seq

Genomic Coordinates Reverse (-)

3725323 .. 3727407

Gene Structure 2085 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16283

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCTTCTTCAATTGCGAGACGTGCCCTAATTCCAGAGGACCCTCCAAGCTTCTGCATTAAGATTGTCACTGATAATGACCTCCGAGATGGGAAGTCCATATTCCTCAAGGCTCCAAATTGTGGGACATGGTGGCCAATTGGAGTGAAAAGGTCAGTTCGTGGTGGCCGGATGTGGTTACACAAGGGATGGCAAGACTTTGCAAACTTTTACTCGCTGGACCAGGGCTACTTTGCATTGTTCACCTATGAAGGCGAACATTCCCATTTCCTAGTACGCCTTTTTCACTGGAATGATCGATATGGAAATAGACTACCCTATTCATGGAGGAGGTATGTGTTTTTGTGTTTTTGTAAGTTTTCATTTAGAACTTTTATCGGGTTTTTCCTGTGTCATGGACATGATTTGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009909 GO:0010048 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0065007 GO:0070013 GO:0097159 GO:1901363 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

137

Amino Acids

16.27

Weight (kDa)

9.3

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	16 - 95	2.3e-08	B3 DNA binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0030531)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0182481 RchiOBHm_Chr7g0182521

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	122
AcoI	YGGCCR	2 cut(s)	134, 166
AfaI	GTAC	1 cut(s)	276
AfiI	CCNNNNNNNGG	2 cut(s)	122, 324
AgsI	TTSAA	1 cut(s)	12
AjiI	CACGTC	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	1 cut(s)	51
AluI	AGCT	1 cut(s)	51
Alw26I	GTCTC	1 cut(s)	13
AoxI	GGCC	2 cut(s)	134, 166
AspS9I	GGNCC	2 cut(s)	40, 220
AsuHPI	GGTGA	1 cut(s)	235
AvaII	GGWCC	2 cut(s)	40, 220
BaeGI	GKGCMC	1 cut(s)	28
BalI	TGGCCA	1 cut(s)	136
BccI	CCATC	2 cut(s)	83, 183
BciT130I	CCWGG	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	13
BfaI	CTAG	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	2 cut(s)	40, 220
BmgBI	CACGTC	1 cut(s)	23
BmgT120I	GGNCC	2 cut(s)	40, 220
BmiI	GGNNCC	2 cut(s)	42, 114
BmrFI	CCNGG	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	92
Bsa29I	ATCGAT	1 cut(s)	298
BsaJI	CCNNGG	1 cut(s)	223
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 324
Bse1I	ACTGG	1 cut(s)	293
BseBI	CCWGG	1 cut(s)	224
BseCI	ATCGAT	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	223
BseGI	GGATG	2 cut(s)	177, 194
BseLI	CCNNNNNNNGG	2 cut(s)	122, 324
BseNI	ACTGG	1 cut(s)	293
BseRI	GAGGAG	1 cut(s)	343
BseSI	GKGCMC	1 cut(s)	28
BshFI	GGCC	2 cut(s)	136, 168
BshVI	ATCGAT	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	169
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	2 cut(s)	122, 324
BsmAI	GTCTC	1 cut(s)	13
BsmBI	CGTCTC	1 cut(s)	13
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	136, 168
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp143I	GATC	1 cut(s)	295
BspANI	GGCC	2 cut(s)	136, 168
BspDI	ATCGAT	1 cut(s)	298
BspLI	GGNNCC	2 cut(s)	42, 114
BsrI	ACTGG	1 cut(s)	293
BssECI	CCNNGG	1 cut(s)	223
BssMI	GATC	1 cut(s)	295
Bst2UI	CCWGG	1 cut(s)	224
BstF5I	GGATG	2 cut(s)	177, 194
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNI	CCWGG	1 cut(s)	224
BstSCI	CCNGG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	28
Bsu15I	ATCGAT	1 cut(s)	298
BsuRI	GGCC	2 cut(s)	136, 168
BsuTUI	ATCGAT	1 cut(s)	298
BtrI	CACGTC	1 cut(s)	23
BtsCI	GGATG	2 cut(s)	177, 194
BtsIMutI	CAGTG	2 cut(s)	69, 286
Cfr13I	GGNCC	2 cut(s)	40, 220
ClaI	ATCGAT	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	275
CviAII	CATG	4 cut(s)	129, 324, 395, 401
CviJI	RGCY	6 cut(s)	5, 51, 113, 136, 168, 228
CviKI_1	RGCY	6 cut(s)	5, 51, 113, 136, 168, 228
CviQI	GTAC	1 cut(s)	275
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
EaeI	YGGCCR	2 cut(s)	134, 166
Eco47I	GGWCC	2 cut(s)	40, 220
EcoO109I	RGGNCCY	1 cut(s)	40
EcoRII	CCWGG	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	13
FaeI	CATG	4 cut(s)	132, 327, 398, 404
FaiI	YATR	8 cut(s)	101, 130, 249, 303, 325, 336, 396, 402
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	4 cut(s)	128, 323, 394, 400
FokI	GGATG	2 cut(s)	184, 201
FspBI	CTAG	1 cut(s)	272
HaeIII	GGCC	2 cut(s)	136, 168
HapII	CCGG	1 cut(s)	169
Hin1II	CATG	4 cut(s)	132, 327, 398, 404
HindIII	AAGCTT	1 cut(s)	49
HpaII	CCGG	1 cut(s)	169
HphI	GGTGA	1 cut(s)	235
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	1 cut(s)	86
Hpy188III	TCNNGA	1 cut(s)	35
Hpy8I	GTNNAC	1 cut(s)	243
HpyAV	CCTTC	1 cut(s)	245
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	3 cut(s)	57, 203, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	4 cut(s)	132, 327, 398, 404
Kzo9I	GATC	1 cut(s)	295
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	7 cut(s)	48, 182, 203, 209, 236, 274, 401
MaeI	CTAG	1 cut(s)	272
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	2 cut(s)	67, 177
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MfeI	CAATTG	2 cut(s)	12, 138
MhlI	GDGCHC	1 cut(s)	28
MlsI	TGGCCA	1 cut(s)	136
MluCI	AATT	4 cut(s)	12, 30, 118, 138
MluNI	TGGCCA	1 cut(s)	136
MnlI	CCTC	6 cut(s)	31, 54, 92, 116, 321, 324
Mox20I	TGGCCA	1 cut(s)	136
MscI	TGGCCA	1 cut(s)	136
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	2 cut(s)	291, 399
Msp20I	TGGCCA	1 cut(s)	136
MspI	CCGG	1 cut(s)	169
MspR9I	CCNGG	1 cut(s)	224
MunI	CAATTG	2 cut(s)	12, 138
MvaI	CCWGG	1 cut(s)	224
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	4 cut(s)	132, 327, 398, 404
NlaIV	GGNNCC	2 cut(s)	42, 114
NmuCI	GTSAC	1 cut(s)	67
PflMI	CCANNNNNTGG	1 cut(s)	122
PpuMI	RGGWCCY	1 cut(s)	40
Psp5II	RGGWCCY	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	42, 114
PspPI	GGNCC	2 cut(s)	40, 220
PspPPI	RGGWCCY	1 cut(s)	40
RsaI	GTAC	1 cut(s)	276
RsaNI	GTAC	1 cut(s)	275
RseI	CAYNNNNRTG	2 cut(s)	291, 399
SaqAI	TTAA	1 cut(s)	60
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	2 cut(s)	40, 220
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	28
SetI	ASST	6 cut(s)	25, 53, 84, 155, 248, 335
SinI	GGWCC	2 cut(s)	40, 220
SmiMI	CAYNNNNRTG	2 cut(s)	291, 399
SmlI	CTYRAG	1 cut(s)	107
SmoI	CTYRAG	1 cut(s)	107
Sse9I	AATT	4 cut(s)	12, 30, 118, 138
SspMI	CTAG	1 cut(s)	272
StyD4I	CCNGG	1 cut(s)	222
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	298
TasI	AATT	4 cut(s)	12, 30, 118, 138
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	2 cut(s)	76, 293
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	3 cut(s)	264, 312, 351
TspRI	CASTG	2 cut(s)	76, 293
Van91I	CCANNNNNTGG	1 cut(s)	122
VpaK11BI	GGWCC	2 cut(s)	40, 220
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.