RchiOBHm_Chr7g0182551

Cell division control protein 48

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0030510
Physical Location & Seq
Forward (+)
3765399 .. 3767326
1928 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16285

Sequence Viewer

Length: 267 bp
ATGTGGTGCGCAGTTAGTTCTCATCAGAGTGAGTTGGCACTGCGAGAGGCACATACATTGTCAGGGAAGCCATCAGTTGTGTTTATAGATGAAATCGATGCTCTCTGTCCTCGCCGTGATTCTAGAAGAGAGCAAGATGCATGTTCGTATAGCTGCTCAACTGCGTTTACTGATGCAGTCAAAGGCTTCGTTGACAGATGTACCGCATTTGTTGTTGCCTCCACTAATCCACGGAATATGATGATTTATTTTTTATCAGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
AAA

Protein Analysis

88

Amino Acids

9.8

Weight (kDa)

6.03

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 5 - 77 4.7e-07 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0030510)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0182551
rosa_roxburghii Rroxscaffold_3G00271200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 10
AciI CCGC 1 cut(s) 204
AfaI GTAC 1 cut(s) 202
AluBI AGCT 1 cut(s) 153
AluI AGCT 1 cut(s) 153
ApeKI GCWGC 1 cut(s) 153
AspLEI GCGC 1 cut(s) 11
BaeI ACNNNNGTAYC 2 cut(s) 184, 217
BbvI GCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 79
BceAI ACGGC 1 cut(s) 99
BfaI CTAG 1 cut(s) 123
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
BmsI GCATC 3 cut(s) 88, 127, 163
Bsa29I ATCGAT 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 230
BseCI ATCGAT 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 230
BseXI GCAGC 1 cut(s) 140
BshVI ATCGAT 1 cut(s) 96
BspACI CCGC 1 cut(s) 204
BspDI ATCGAT 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 121
BstDSI CCRYGG 1 cut(s) 230
BstHHI GCGC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 144
BstV1I GCAGC 1 cut(s) 140
Bsu15I ATCGAT 1 cut(s) 96
BsuTUI ATCGAT 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 230
BtsI GCAGTG 1 cut(s) 38
BtsIMutI CAGTG 1 cut(s) 38
CfoI GCGC 1 cut(s) 11
ClaI ATCGAT 1 cut(s) 96
Csp6I GTAC 1 cut(s) 201
CviAII CATG 1 cut(s) 141
CviJI RGCY 3 cut(s) 70, 153, 186
CviKI_1 RGCY 3 cut(s) 70, 153, 186
CviQI GTAC 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 121
EarI CTCTTC 1 cut(s) 121
EcoT22I ATGCAT 1 cut(s) 142
FaeI CATG 1 cut(s) 144
FaiI YATR 5 cut(s) 54, 86, 142, 150, 239
FatI CATG 1 cut(s) 140
Fnu4HI GCNGC 1 cut(s) 154
Fsp4HI GCNGC 1 cut(s) 154
FspBI CTAG 1 cut(s) 123
FspI TGCGCA 1 cut(s) 10
GlaI GCGC 1 cut(s) 10
GluI GCNGC 1 cut(s) 154
HhaI GCGC 1 cut(s) 11
Hin1II CATG 1 cut(s) 144
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HincII GTYRAC 1 cut(s) 193
HindII GTYRAC 1 cut(s) 193
HinfI GANTC 1 cut(s) 119
Hpy166II GTNNAC 2 cut(s) 168, 193
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 2 cut(s) 123, 258
Hpy8I GTNNAC 2 cut(s) 168, 193
HpyCH4V TGCA 2 cut(s) 140, 176
Hsp92II CATG 1 cut(s) 144
HspAI GCGC 1 cut(s) 9
LpnPI CCDG 2 cut(s) 48, 243
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 3 cut(s) 88, 127, 163
MaeI CTAG 1 cut(s) 123
MboII GAAGA 1 cut(s) 138
MnlI CCTC 3 cut(s) 40, 120, 229
Mph1103I ATGCAT 1 cut(s) 142
MslI CAYNNNNRTG 1 cut(s) 27
NlaIII CATG 1 cut(s) 144
NsbI TGCGCA 1 cut(s) 10
NsiI ATGCAT 1 cut(s) 142
NspI RCATGY 1 cut(s) 144
PfeI GAWTC 1 cut(s) 119
PkrI GCNGC 1 cut(s) 155
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
RseI CAYNNNNRTG 1 cut(s) 27
SatI GCNGC 1 cut(s) 154
SetI ASST 1 cut(s) 155
SfaNI GCATC 3 cut(s) 88, 127, 163
SgeI CNNG 8 cut(s) 56, 75, 123, 128, 135, 146, 153, 243
SmiMI CAYNNNNRTG 1 cut(s) 27
SsiI CCGC 1 cut(s) 204
SspMI CTAG 1 cut(s) 123
TaqI TCGA 1 cut(s) 96
TfiI GAWTC 1 cut(s) 119
TscAI CASTG 1 cut(s) 45
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 1 cut(s) 105
TspGWI ACGGA 1 cut(s) 247
TspRI CASTG 1 cut(s) 45
XbaI TCTAGA 1 cut(s) 122
XceI RCATGY 1 cut(s) 144
XspI CTAG 1 cut(s) 123
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.