Rroxscaffold_3G00271200

Cell division control protein 48

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0030510
Physical Location & Seq
Reverse (-)
63594613 .. 63595383
771 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00271200.1

Sequence Viewer

Length: 465 bp
ATGGAGAGCCGAAAAAGCTATAGGCGGCAACGCCCAAGCTCTCAGAGAACTCATAGTCTACCCTCTCCTCTTTTCTCGCCAAGCCAAAAAGCTCGGCCTCAAAGTAAACTCATCACAAACAACACATTCCTTCTCCCACTTCCTTTGATTTTCAATTCATTCATTACTGGTGTTTCTGGGTTTTCCTTCAGTGGCCTCGTGGTTTGCTTCTCTACGGTCCTCCCGGCACAGGAAAGTCCACATACTGTTCACAGAGCTTATACTGGAGAGAGTGAGTTGGCACTGCGAGAGGCACATACATTGTCAGGGAAGCCATCAGTCGTGTTTATAGATGAAATCGATGCTCTCTGTCCTCGCCGTGATTCTAGAAGAGAGCAAGATGTTCGTACAGCTGCTCAACTGCGTTTACTGATGGAGTCAAAGGCTTCGTCGACAGATGTACCACAAGTTGTTGTTGTTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05134 map04141 map05134
Pfam Domains
Protein Families
AAA

Protein Analysis

154

Amino Acids

17.1

Weight (kDa)

9.9

Isoelectric Point (pI)

66.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 85 - 153 9.1e-09 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030510)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0182551
rosa_roxburghii Rroxscaffold_3G00271200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 58, 431
AciI CCGC 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 172
AfaI GTAC 2 cut(s) 388, 441
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 1 cut(s) 154
AluBI AGCT 5 cut(s) 18, 39, 92, 257, 392
AluI AGCT 5 cut(s) 18, 39, 92, 257, 392
AoxI GGCC 2 cut(s) 95, 193
ApeKI GCWGC 1 cut(s) 392
ArsI GACNNNNNNTTYG 2 cut(s) 413, 445
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 224
AvaII GGWCC 1 cut(s) 217
BaeI ACNNNNGTAYC 2 cut(s) 423, 456
BauI CACGAG 1 cut(s) 197
BbvI GCAGC 1 cut(s) 379
BccI CCATC 2 cut(s) 322, 406
BceAI ACGGC 1 cut(s) 342
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BcnI CCSGG 1 cut(s) 224
BfaI CTAG 1 cut(s) 366
BfmI CTRYAG 1 cut(s) 19
BisI GCNGC 2 cut(s) 26, 393
BlsI GCNGC 2 cut(s) 27, 394
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 1 cut(s) 217
BmgT120I GGNCC 1 cut(s) 217
BmrFI CCNGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 331
BpmI CTGGAG 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 224
Bsa29I ATCGAT 1 cut(s) 339
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 2 cut(s) 172, 268
BseCI ATCGAT 1 cut(s) 339
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 56
BseNI ACTGG 2 cut(s) 172, 268
BseRI GAGGAG 1 cut(s) 57
BseXI GCAGC 1 cut(s) 379
BshFI GGCC 2 cut(s) 97, 195
BshVI ATCGAT 1 cut(s) 339
BsiSI CCGG 1 cut(s) 224
BslI CCNNNNNNNGG 1 cut(s) 229
BsnI GGCC 2 cut(s) 97, 195
BspACI CCGC 1 cut(s) 25
BspANI GGCC 2 cut(s) 97, 195
BspCNI CTCAG 1 cut(s) 55
BspDI ATCGAT 1 cut(s) 339
BsrI ACTGG 2 cut(s) 172, 268
BssSI CACGAG 1 cut(s) 197
Bst2BI CACGAG 1 cut(s) 197
Bst4CI ACNGT 2 cut(s) 217, 247
Bst6I CTCTTC 1 cut(s) 364
BstDEI CTNAG 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 15
BstSCI CCNGG 1 cut(s) 222
BstSFI CTRYAG 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 379
Bsu15I ATCGAT 1 cut(s) 339
BsuRI GGCC 2 cut(s) 97, 195
BsuTUI ATCGAT 1 cut(s) 339
BtsI GCAGTG 1 cut(s) 281
BtsIMutI CAGTG 2 cut(s) 196, 281
Cfr13I GGNCC 1 cut(s) 217
ClaI ATCGAT 1 cut(s) 339
Csp6I GTAC 2 cut(s) 387, 440
CspCI CAANNNNNGTGG 2 cut(s) 126, 161
CviQI GTAC 2 cut(s) 387, 440
DdeI CTNAG 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 364
Eco47I GGWCC 1 cut(s) 217
Eco57I CTGAAG 1 cut(s) 172
FaiI YATR 6 cut(s) 21, 54, 243, 261, 297, 329
FblI GTMKAC 2 cut(s) 58, 431
Fnu4HI GCNGC 2 cut(s) 26, 393
Fsp4HI GCNGC 2 cut(s) 26, 393
FspBI CTAG 1 cut(s) 366
GluI GCNGC 2 cut(s) 26, 393
GsuI CTGGAG 1 cut(s) 285
HaeIII GGCC 2 cut(s) 97, 195
HapII CCGG 1 cut(s) 224
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HinfI GANTC 2 cut(s) 362, 416
HpaII CCGG 1 cut(s) 224
Hpy166II GTNNAC 6 cut(s) 59, 107, 239, 250, 407, 432
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 1 cut(s) 366
Hpy8I GTNNAC 6 cut(s) 59, 107, 239, 250, 407, 432
Hpy99I CGWCG 1 cut(s) 433
HpyAV CCTTC 2 cut(s) 140, 196
HpyCH4III ACNGT 2 cut(s) 217, 247
HpyF10VI GCNNNNNNNGC 1 cut(s) 15
HpyF3I CTNAG 1 cut(s) 42
LpnPI CCDG 6 cut(s) 153, 162, 215, 237, 249, 291
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 1 cut(s) 331
MaeI CTAG 1 cut(s) 366
MboII GAAGA 1 cut(s) 381
MluCI AATT 1 cut(s) 154
MlyI GAGTC 1 cut(s) 425
MnlI CCTC 7 cut(s) 73, 78, 108, 206, 230, 283, 363
MspA1I CMGCKG 1 cut(s) 392
MspI CCGG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 15
NciI CCSGG 1 cut(s) 224
NmeAIII GCCGAG 1 cut(s) 73
PfeI GAWTC 1 cut(s) 362
PkrI GCNGC 2 cut(s) 27, 394
PleI GAGTC 1 cut(s) 424
PpsI GAGTC 1 cut(s) 424
PspPI GGNCC 1 cut(s) 217
PvuII CAGCTG 1 cut(s) 392
RsaI GTAC 2 cut(s) 388, 441
RsaNI GTAC 2 cut(s) 387, 440
SalI GTCGAC 1 cut(s) 430
SatI GCNGC 2 cut(s) 26, 393
Sau96I GGNCC 1 cut(s) 217
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 224
SetI ASST 5 cut(s) 20, 41, 94, 259, 394
SfaNI GCATC 1 cut(s) 331
SfcI CTRYAG 1 cut(s) 19
SinI GGWCC 1 cut(s) 217
Sse9I AATT 1 cut(s) 154
SsiI CCGC 1 cut(s) 25
SspMI CTAG 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 2 cut(s) 217, 247
TaqI TCGA 2 cut(s) 339, 431
TasI AATT 1 cut(s) 154
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 1 cut(s) 362
TscAI CASTG 2 cut(s) 196, 288
TseI GCWGC 1 cut(s) 392
TspDTI ATGAA 3 cut(s) 147, 151, 348
TspRI CASTG 2 cut(s) 196, 288
VpaK11BI GGWCC 1 cut(s) 217
XbaI TCTAGA 1 cut(s) 365
XmiI GTMKAC 2 cut(s) 58, 431
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.