RchiOBHm_Chr7g0184921
NAC Family

Inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0030538
Physical Location & Seq
Forward (+)
5240379 .. 5241441
1063 bp
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UTR
Exon/CDS
Intron
PRQ16499

Sequence Viewer

Length: 336 bp
ATGCGGGTTTCTTTCATAAGCAGCAAAGGCAAGCATGCTAGGTCTCCCAGGATGCCGATCACATTTTCATTAGAGGAGTTGGTGGATGTTACCAGAAATTTTGACAGCCTTTTTGGGCTTCGTTCATACGGGAAGATTGTTAGTCTCATCGGTGTGGCCAAGGCTGTGCACTTCCTACATACTGGAATTATTCCTGGTTTCTTGAGCAACCAGCTGAAGATGAACAATATCTTGCTCAATGAGCATGATAATGCAAAATTGAGCGACTACGGACTGTCTATTGTCTCAGAAGAAACTGATATGTCTATGGCAAATGAAGGCCGTAAGTCATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

111

Amino Acids

12.41

Weight (kDa)

9.1

Isoelectric Point (pI)

38.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 51 - 100 1e-05 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030538)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0184921
rosa_samantha Rh7DG070300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 4
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 1 cut(s) 97
AcuI CTGAAG 1 cut(s) 236
AjnI CCWGG 2 cut(s) 47, 193
AluBI AGCT 1 cut(s) 214
AluI AGCT 1 cut(s) 214
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 3 cut(s) 48, 149, 289
Alw44I GTGCAC 1 cut(s) 167
AoxI GGCC 2 cut(s) 156, 319
ApaLI GTGCAC 1 cut(s) 167
ApeKI GCWGC 1 cut(s) 21
ApoI RAATTY 1 cut(s) 97
ArsI GACNNNNNNTTYG 2 cut(s) 95, 127
BaeGI GKGCMC 1 cut(s) 171
BalI TGGCCA 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 1 cut(s) 33
BceAI ACGGC 1 cut(s) 306
BciT130I CCWGG 2 cut(s) 49, 195
BcoDI GTCTC 3 cut(s) 48, 149, 289
BfaI CTAG 1 cut(s) 39
BisI GCNGC 1 cut(s) 22
BlsI GCNGC 1 cut(s) 23
Bme1390I CCNGG 2 cut(s) 49, 195
BmrFI CCNGG 2 cut(s) 49, 195
BmsI GCATC 1 cut(s) 42
BpuEI CTTGAG 1 cut(s) 223
BsaBI GATNNNNATC 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 48
BsaJI CCNNGG 2 cut(s) 47, 159
Bse1I ACTGG 1 cut(s) 187
Bse8I GATNNNNATC 1 cut(s) 56
BseBI CCWGG 2 cut(s) 49, 195
BseDI CCNNGG 2 cut(s) 47, 159
BseGI GGATG 2 cut(s) 57, 91
BseJI GATNNNNATC 1 cut(s) 56
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 187
BseRI GAGGAG 1 cut(s) 89
BseSI GKGCMC 1 cut(s) 171
BseXI GCAGC 1 cut(s) 33
BshFI GGCC 2 cut(s) 158, 321
BsiHKAI GWGCWC 1 cut(s) 171
BsmAI GTCTC 3 cut(s) 48, 149, 289
BsnI GGCC 2 cut(s) 158, 321
Bso31I GGTCTC 1 cut(s) 48
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 1 cut(s) 57
BspACI CCGC 1 cut(s) 4
BspANI GGCC 2 cut(s) 158, 321
BspCNI CTCAG 1 cut(s) 299
BspTNI GGTCTC 1 cut(s) 48
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 2 cut(s) 47, 159
BssMI GATC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 2 cut(s) 49, 195
Bst4CI ACNGT 1 cut(s) 276
BstC8I GCNNGC 2 cut(s) 32, 36
BstDEI CTNAG 1 cut(s) 286
BstF5I GGATG 2 cut(s) 57, 91
BstKTI GATC 1 cut(s) 60
BstMAI GTCTC 3 cut(s) 48, 149, 289
BstMBI GATC 1 cut(s) 57
BstMWI GCNNNNNNNGC 2 cut(s) 27, 241
BstNI CCWGG 2 cut(s) 49, 195
BstNSI RCATGY 1 cut(s) 38
BstSCI CCNGG 2 cut(s) 47, 193
BstSLI GKGCMC 1 cut(s) 171
BstV1I GCAGC 1 cut(s) 33
BsuRI GGCC 2 cut(s) 158, 321
BtsCI GGATG 2 cut(s) 57, 91
Cac8I GCNNGC 2 cut(s) 32, 36
CviAII CATG 3 cut(s) 35, 245, 330
CviJI RGCY 6 cut(s) 108, 118, 158, 164, 214, 321
CviKI_1 RGCY 6 cut(s) 108, 118, 158, 164, 214, 321
DdeI CTNAG 1 cut(s) 286
DpnI GATC 1 cut(s) 59
DpnII GATC 1 cut(s) 57
EaeI YGGCCR 1 cut(s) 156
Eco130I CCWWGG 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 236
EcoRII CCWGG 2 cut(s) 47, 193
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 3 cut(s) 38, 248, 333
FaiI YATR 8 cut(s) 17, 36, 127, 180, 246, 302, 308, 331
FatI CATG 3 cut(s) 34, 244, 329
Fnu4HI GCNGC 1 cut(s) 22
FokI GGATG 2 cut(s) 64, 98
Fsp4HI GCNGC 1 cut(s) 22
FspBI CTAG 1 cut(s) 39
GluI GCNGC 1 cut(s) 22
HaeIII GGCC 2 cut(s) 158, 321
Hin1II CATG 3 cut(s) 38, 248, 333
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 311
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4V TGCA 2 cut(s) 169, 254
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 241
HpyF3I CTNAG 1 cut(s) 286
Hsp92II CATG 3 cut(s) 38, 248, 333
Kzo9I GATC 1 cut(s) 57
LpnPI CCDG 7 cut(s) 34, 61, 106, 168, 180, 207, 224
Lsp1109I GCAGC 1 cut(s) 33
LweI GCATC 1 cut(s) 42
MaeI CTAG 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 88
MalI GATC 1 cut(s) 59
MboI GATC 1 cut(s) 57
MboII GAAGA 3 cut(s) 145, 229, 302
MhlI GDGCHC 1 cut(s) 171
MlsI TGGCCA 1 cut(s) 158
MluCI AATT 3 cut(s) 97, 186, 257
MluNI TGGCCA 1 cut(s) 158
MnlI CCTC 1 cut(s) 67
Mox20I TGGCCA 1 cut(s) 158
MscI TGGCCA 1 cut(s) 158
MslI CAYNNNNRTG 2 cut(s) 152, 249
Msp20I TGGCCA 1 cut(s) 158
MspA1I CMGCKG 1 cut(s) 214
MspR9I CCNGG 2 cut(s) 49, 195
MvaI CCWGG 2 cut(s) 49, 195
MwoI GCNNNNNNNGC 2 cut(s) 27, 241
NdeII GATC 1 cut(s) 57
NlaIII CATG 3 cut(s) 38, 248, 333
NspI RCATGY 1 cut(s) 38
PaeI GCATGC 1 cut(s) 38
PkrI GCNGC 1 cut(s) 23
Psp6I CCWGG 2 cut(s) 47, 193
PspGI CCWGG 2 cut(s) 47, 193
PvuII CAGCTG 1 cut(s) 214
RseI CAYNNNNRTG 2 cut(s) 152, 249
SatI GCNGC 1 cut(s) 22
Sau3AI GATC 1 cut(s) 57
ScrFI CCNGG 2 cut(s) 49, 195
SduI GDGCHC 1 cut(s) 171
SetI ASST 2 cut(s) 44, 216
SfaNI GCATC 1 cut(s) 42
SmiMI CAYNNNNRTG 2 cut(s) 152, 249
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
SphI GCATGC 1 cut(s) 38
Sse9I AATT 3 cut(s) 97, 186, 257
SsiI CCGC 1 cut(s) 4
SspMI CTAG 1 cut(s) 39
StyD4I CCNGG 2 cut(s) 47, 193
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 276
TasI AATT 3 cut(s) 97, 186, 257
TseI GCWGC 1 cut(s) 21
TspDTI ATGAA 5 cut(s) 4, 57, 114, 236, 330
TspGWI ACGGA 1 cut(s) 285
VneI GTGCAC 1 cut(s) 167
XapI RAATTY 1 cut(s) 97
XceI RCATGY 1 cut(s) 38
XspI CTAG 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.