Rh7DG070300
NAC Family

Inactive leucine-rich repeat receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0030538
Physical Location & Seq
Forward (+)
5411053 .. 5416429
5377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG070300.1

Sequence Viewer

Length: 465 bp
ATGCCGATCACATTTTCATTAGAGGAGTTGGTGGATGTTACCAGAAATTTTGACAGCCTTTTTGGGCTTCGTTCATACGGGAAGATTGTTAGTCTCATCGGTGTGGCCAAGGCTGTGCACTTCCTACATACTGGAATTATTCCTGGTTTCTTGAGCAACCAGCTGAAGATGAACAATATCTTGCTCAATGAGCATGATAATGCAAAATTGAGCGACTACGGACTGTCTATTGTCTCAGAAGAAACTGATATGTCTATGGCAAATGAAGGCCGTTATCTGAGTCTCCGGAATCGATCCCGTTCCAAACTGCCATCTCACCAATTTGTTCGTGGGTATGCAAAGAGCACCAAGCCTCACTTCCGTGGCCACTTCTTCTATGCGTTCAAGCTAGATGATGCGGAATGGAATAGGGCACATCGTCATGTCTTGGACAATACACCTGAAGTTTGGCCATATAAACGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

154

Amino Acids

17.78

Weight (kDa)

9.39

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030538)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0184921
rosa_samantha Rh7DG070300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 285
AciI CCGC 1 cut(s) 398
AclWI GGATC 1 cut(s) 288
AcoI YGGCCR 3 cut(s) 105, 364, 449
AcsI RAATTY 1 cut(s) 46
AcuI CTGAAG 2 cut(s) 185, 462
AgsI TTSAA 1 cut(s) 385
AjnI CCWGG 1 cut(s) 142
AjuI GAANNNNNNNTTGG 2 cut(s) 341, 373
AleI CACNNNNGTG 1 cut(s) 360
AluBI AGCT 2 cut(s) 163, 388
AluI AGCT 2 cut(s) 163, 388
Alw21I GWGCWC 2 cut(s) 120, 347
Alw26I GTCTC 3 cut(s) 98, 238, 287
Alw44I GTGCAC 1 cut(s) 116
AlwI GGATC 1 cut(s) 288
Aor13HI TCCGGA 1 cut(s) 285
AoxI GGCC 4 cut(s) 105, 268, 364, 449
ApaLI GTGCAC 1 cut(s) 116
ApoI RAATTY 1 cut(s) 46
ArsI GACNNNNNNTTYG 2 cut(s) 44, 76
AsuHPI GGTGA 1 cut(s) 308
BaeGI GKGCMC 2 cut(s) 120, 415
BalI TGGCCA 3 cut(s) 107, 366, 451
Bbv12I GWGCWC 2 cut(s) 120, 347
BccI CCATC 1 cut(s) 319
BceAI ACGGC 1 cut(s) 255
BciT130I CCWGG 1 cut(s) 144
BcoDI GTCTC 3 cut(s) 98, 238, 287
BfaI CTAG 1 cut(s) 389
Bme1390I CCNGG 1 cut(s) 144
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 385
BpuEI CTTGAG 1 cut(s) 172
Bsa29I ATCGAT 1 cut(s) 292
BsaJI CCNNGG 2 cut(s) 108, 361
BsaWI WCCGGW 1 cut(s) 285
Bse1I ACTGG 1 cut(s) 136
BseAI TCCGGA 1 cut(s) 285
BseBI CCWGG 1 cut(s) 144
BseCI ATCGAT 1 cut(s) 292
BseDI CCNNGG 2 cut(s) 108, 361
BseGI GGATG 1 cut(s) 40
BseMII CTCAG 2 cut(s) 249, 269
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 38
BseSI GKGCMC 2 cut(s) 120, 415
BshFI GGCC 4 cut(s) 107, 270, 366, 451
BshVI ATCGAT 1 cut(s) 292
BsiHKAI GWGCWC 2 cut(s) 120, 347
BsiSI CCGG 1 cut(s) 286
BsmAI GTCTC 3 cut(s) 98, 238, 287
BsnI GGCC 4 cut(s) 107, 270, 366, 451
Bsp1286I GDGCHC 3 cut(s) 120, 347, 415
Bsp13I TCCGGA 1 cut(s) 285
Bsp143I GATC 2 cut(s) 6, 293
BspACI CCGC 1 cut(s) 398
BspANI GGCC 4 cut(s) 107, 270, 366, 451
BspCNI CTCAG 2 cut(s) 248, 270
BspDI ATCGAT 1 cut(s) 292
BspEI TCCGGA 1 cut(s) 285
BspPI GGATC 1 cut(s) 288
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 2 cut(s) 108, 361
BssMI GATC 2 cut(s) 6, 293
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 144
Bst4CI ACNGT 2 cut(s) 225, 462
BstDEI CTNAG 2 cut(s) 235, 278
BstDSI CCRYGG 1 cut(s) 361
BstF5I GGATG 1 cut(s) 40
BstKTI GATC 2 cut(s) 9, 296
BstMAI GTCTC 3 cut(s) 98, 238, 287
BstMBI GATC 2 cut(s) 6, 293
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstNI CCWGG 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 142
BstSLI GKGCMC 2 cut(s) 120, 415
Bsu15I ATCGAT 1 cut(s) 292
BsuRI GGCC 4 cut(s) 107, 270, 366, 451
BsuTUI ATCGAT 1 cut(s) 292
BtgI CCRYGG 1 cut(s) 361
BtsCI GGATG 1 cut(s) 40
ClaI ATCGAT 1 cut(s) 292
CviAII CATG 2 cut(s) 194, 422
DdeI CTNAG 2 cut(s) 235, 278
DpnI GATC 2 cut(s) 8, 295
DpnII GATC 2 cut(s) 6, 293
EaeI YGGCCR 3 cut(s) 105, 364, 449
Eco130I CCWWGG 1 cut(s) 108
Eco57I CTGAAG 2 cut(s) 185, 462
EcoRII CCWGG 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 2 cut(s) 197, 425
FalI AAGNNNNNCTT 2 cut(s) 341, 373
FatI CATG 2 cut(s) 193, 421
FokI GGATG 1 cut(s) 47
FspBI CTAG 1 cut(s) 389
HaeIII GGCC 4 cut(s) 107, 270, 366, 451
HapII CCGG 1 cut(s) 286
Hin1II CATG 2 cut(s) 197, 425
HinfI GANTC 2 cut(s) 280, 289
HpaII CCGG 1 cut(s) 286
HphI GGTGA 1 cut(s) 308
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 238, 279
Hpy188III TCNNGA 2 cut(s) 151, 286
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 1 cut(s) 260
HpyCH4III ACNGT 2 cut(s) 225, 462
HpyCH4V TGCA 3 cut(s) 118, 203, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
HpyF3I CTNAG 2 cut(s) 235, 278
Hsp92II CATG 2 cut(s) 197, 425
Kpn2I TCCGGA 1 cut(s) 285
Kzo9I GATC 2 cut(s) 6, 293
LpnPI CCDG 7 cut(s) 55, 117, 129, 156, 173, 299, 453
LweI GCATC 1 cut(s) 385
MaeI CTAG 1 cut(s) 389
MaeIII GTNAC 1 cut(s) 37
MalI GATC 2 cut(s) 8, 295
MboI GATC 2 cut(s) 6, 293
MboII GAAGA 4 cut(s) 94, 178, 251, 364
MhlI GDGCHC 3 cut(s) 120, 347, 415
MlsI TGGCCA 3 cut(s) 107, 366, 451
MluCI AATT 4 cut(s) 46, 135, 206, 320
MluNI TGGCCA 3 cut(s) 107, 366, 451
MlyI GAGTC 1 cut(s) 289
MnlI CCTC 2 cut(s) 16, 363
Mox20I TGGCCA 3 cut(s) 107, 366, 451
MroI TCCGGA 1 cut(s) 285
MscI TGGCCA 3 cut(s) 107, 366, 451
MslI CAYNNNNRTG 4 cut(s) 101, 198, 360, 420
Msp20I TGGCCA 3 cut(s) 107, 366, 451
MspA1I CMGCKG 1 cut(s) 163
MspI CCGG 1 cut(s) 286
MspR9I CCNGG 1 cut(s) 144
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 190
NdeII GATC 2 cut(s) 6, 293
NlaIII CATG 2 cut(s) 197, 425
OliI CACNNNNGTG 1 cut(s) 360
PfeI GAWTC 1 cut(s) 289
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PvuII CAGCTG 1 cut(s) 163
RseI CAYNNNNRTG 4 cut(s) 101, 198, 360, 420
Sau3AI GATC 2 cut(s) 6, 293
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 144
SduI GDGCHC 3 cut(s) 120, 347, 415
SetI ASST 3 cut(s) 165, 390, 442
SfaNI GCATC 1 cut(s) 385
SmiMI CAYNNNNRTG 4 cut(s) 101, 198, 360, 420
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
Sse9I AATT 4 cut(s) 46, 135, 206, 320
SsiI CCGC 1 cut(s) 398
SspMI CTAG 1 cut(s) 389
StyD4I CCNGG 1 cut(s) 142
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 225, 462
TaqI TCGA 1 cut(s) 292
TasI AATT 4 cut(s) 46, 135, 206, 320
TfiI GAWTC 1 cut(s) 289
TspDTI ATGAA 4 cut(s) 6, 63, 185, 279
TspGWI ACGGA 2 cut(s) 234, 350
VneI GTGCAC 1 cut(s) 116
XapI RAATTY 1 cut(s) 46
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.