RchiOBHm_Chr7g0200681

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
18420840 .. 18424622
3783 bp
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UTR
Exon/CDS
Intron
PRQ17964

Sequence Viewer

Length: 192 bp
ATGAAAGTGGCTGAATTGGAAGCTAAACTTGGTATTGAGATAAGCAAAATTGAAGCCCTTATTTACTGGCAAGTCATCCAAGCTACTAACATTTTGGCGACCAAAGTTGATTTGCTCAGCGTGATTTCTTCCCATGTCGCAGAAAAGAAAAAGGGATTATGTTTTAAATATTTTAGAGCATGGCACCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

63

Amino Acids

7.2

Weight (kDa)

9.21

Isoelectric Point (pI)

25.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030461)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0200681
rosa_rugosa Rorug05G0348100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 183
AgsI TTSAA 1 cut(s) 53
AjuI GAANNNNNNNTTGG 2 cut(s) 12, 44
AluBI AGCT 2 cut(s) 23, 83
AluI AGCT 2 cut(s) 23, 83
BanI GGYRCC 1 cut(s) 183
BlpI GCTNAGC 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 185
Bpu1102I GCTNAGC 1 cut(s) 116
Bse1I ACTGG 1 cut(s) 71
BseGI GGATG 1 cut(s) 75
BseMII CTCAG 1 cut(s) 130
BseNI ACTGG 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 183
Bsp1720I GCTNAGC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 183
BsrI ACTGG 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 75
CviAII CATG 2 cut(s) 134, 180
CviJI RGCY 4 cut(s) 11, 23, 56, 83
CviKI_1 RGCY 4 cut(s) 11, 23, 56, 83
DdeI CTNAG 1 cut(s) 116
DraI TTTAAA 1 cut(s) 166
FaeI CATG 2 cut(s) 137, 183
FaiI YATR 3 cut(s) 135, 160, 181
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FatI CATG 2 cut(s) 133, 179
FokI GGATG 1 cut(s) 62
Hin1II CATG 2 cut(s) 137, 183
HpyF3I CTNAG 1 cut(s) 116
Hsp92II CATG 2 cut(s) 137, 183
LpnPI CCDG 1 cut(s) 52
MboII GAAGA 1 cut(s) 120
MluCI AATT 2 cut(s) 14, 48
MseI TTAA 1 cut(s) 165
NlaIII CATG 2 cut(s) 137, 183
NlaIV GGNNCC 1 cut(s) 185
PspN4I GGNNCC 1 cut(s) 185
SaqAI TTAA 1 cut(s) 165
SetI ASST 2 cut(s) 25, 85
SgeI CNNG 6 cut(s) 41, 79, 83, 92, 133, 146
Sse9I AATT 2 cut(s) 14, 48
SspI AATATT 1 cut(s) 170
TasI AATT 2 cut(s) 14, 48
Tru1I TTAA 1 cut(s) 165
Tru9I TTAA 1 cut(s) 165
TspDTI ATGAA 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.