Rorug05G0348100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0030461
Physical Location & Seq
Forward (+)
43124690 .. 43126391
1702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0348100.1

Sequence Viewer

Length: 1593 bp
ATGGCACTTGAGCTAGTCCTACTCTTTGTTTTGGGCACTATATCTCTTCTTTTCTTTATCAGGAGAGTTCTAAACCACACTCACCGTGTTCAACACCTCCCTCCAAGCCCTTTAGCTTTGCCCATCATTGGCCACTTCCACCTTCTTGGCCCTCTCATCCACCGCTCGTTCCAAGCTTTATCGTTCCGGTTTGGCCCTATATTTTCCCTCCGCCTCGGCTCCGTCCCATGCATTGTCGTAACCTCTCCTAAGCTCGCAAAAGAGTTCCTCAAAACCCATGAACTCTCCTTCATATCCCATGCTCGGTCCAATGCCATCGAACGCATAACCTATGACTCTTCGTTAGCATTTTCGCCCTACGGACCCTATTGGAAGTTTATCAAGAAGGTAACGGTGAACGAGCTCCTTAGTAGCCATAGCGTCAACAAGTTTCATTCCATTAGGGCGGATGAGTACACTCGGCTCCTGAGGCTGTTTTCTGAGAGAGCCGAGAGTTGTCGGGCTGTGAACCTCAGTGAAGAGCTACCGAGGCTTTGCCACAATGTGATAGGCCAGATGATGCTTGGAAAGTACTCCACTGCGGTTTTGAGCAACACAGAGCGGGCTGAGGAGGCGAGGTTGGTGGTTAGGGAGGCGACGAGGATCTTCGGAGAGTTGAACTTATGTGATTTTAATATGGTATGGAAGAAACTGGATTTCCAGGGGTTTGGGAAGAGAATCGAGGACACACATGTCAAGTTTGATGATTTGGTGGAGAATATTGTTAATCAACGTGAAAAACTGAGAATTAAGAACAATAAAATGAATGAAGGAGAAGAGGATGAGAAGGAGGTCAAGGATTTTCTAAGCATTTTGCTTGATATGTTGGAAGATGAGAGTGGTCAACACAAGGAGGTTGGATTTTCAAGAGTTCACATTAAGGCTCTAATTACGGATTTGTTCACGGCTAGTACTGACACAACAGCTATTGCAATGGAGTGGGCATTAGCGGAGCTCATCAATCACCCAATAGTGCTCGAGAAAGCAAGGGAGGAGATCGATAGCATAGTTGGGAATGGACGACTAGTGGAAGAATCAGATGGTCCAAATCTTCCATACATCCAAGCTATCATAAAAGAAACTTTTAGGCTACACCCACCCGTGCCTATGGTCACAAGAATATCAGTAGAAGATTGTAAGGTCGGGGAATATGTTATTCCAACAAATACAATGCTTTTTGTAAACAATTGGGCCATTGGAAGAGATCCGAAATACTGGGAAAAACCATTAGACTTTTGGCCGGAAAGATTCTTAGAACACATTGGGGGTGGCCATACAAGTGGAATGGATGTTAGAGGCCAACATTTTCAATTTCTTCCATTTGGGTCCGGGAGGAGGATATGTCCCGGTATCAACTTGACCATGAATATGGTTCCTAGTTTAGTAGCAGCTATGATTCAGTGCTTTGATTGGAAGGTTATTCCTAGCAAGAAGTTGAACAATGATGATGTCGTTGAAATGGATGAAAAGCCTGGATTGACAACTCCAAGAGCCCATGATCTTGTGTGTTTTCCGGTAGCTCGCTTCAATTTACTCAATATTCTTAAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HMG_box

Protein Analysis

530

Amino Acids

60.54

Weight (kDa)

6.73

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 34 - 494 4e-92 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030461)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0200681
rosa_rugosa Rorug05G0348100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 731
AccBSI CCGCTC 2 cut(s) 165, 601
AciI CCGC 6 cut(s) 163, 211, 446, 581, 601, 989
AclWI GGATC 2 cut(s) 650, 1238
AcoI YGGCCR 3 cut(s) 130, 1277, 1309
AdeI CACNNNGTG 1 cut(s) 544
AfaI GTAC 3 cut(s) 455, 572, 952
AfiI CCNNNNNNNGG 3 cut(s) 128, 303, 1374
AflIII ACRYGT 1 cut(s) 730
AgsI TTSAA 7 cut(s) 92, 658, 906, 1349, 1477, 1496, 1567
AhlI ACTAGT 1 cut(s) 1063
AjnI CCWGG 2 cut(s) 699, 1510
Alw21I GWGCWC 3 cut(s) 405, 996, 1017
AlwI GGATC 2 cut(s) 650, 1238
Ama87I CYCGRG 1 cut(s) 1016
AoxI GGCC 8 cut(s) 130, 148, 193, 550, 1230, 1277, 1309, 1336
ApeKI GCWGC 1 cut(s) 1427
AspS9I GGNCC 7 cut(s) 149, 194, 306, 362, 1082, 1230, 1365
AsuC2I CCSGG 2 cut(s) 1369, 1386
AsuHPI GGTGA 3 cut(s) 74, 406, 995
AvaI CYCGRG 1 cut(s) 1016
AvaII GGWCC 4 cut(s) 306, 362, 1082, 1365
AxyI CCTNAGG 1 cut(s) 467
BaeGI GKGCMC 1 cut(s) 38
BalI TGGCCA 2 cut(s) 132, 1311
BanII GRGCYC 3 cut(s) 405, 996, 1534
Bbv12I GWGCWC 3 cut(s) 405, 996, 1017
BbvCI CCTCAGC 1 cut(s) 606
BbvI GCAGC 1 cut(s) 1439
BccI CCATC 3 cut(s) 131, 323, 1073
BceAI ACGGC 1 cut(s) 960
BciT130I CCWGG 2 cut(s) 701, 1512
BcnI CCSGG 2 cut(s) 1369, 1386
BcuI ACTAGT 1 cut(s) 1063
BfaI CTAG 5 cut(s) 14, 948, 1064, 1416, 1464
BisI GCNGC 1 cut(s) 1428
BlsI GCNGC 1 cut(s) 1429
BmcAI AGTACT 2 cut(s) 572, 952
Bme1390I CCNGG 4 cut(s) 701, 1369, 1386, 1512
Bme18I GGWCC 4 cut(s) 306, 362, 1082, 1365
BmeT110I CYCGRG 1 cut(s) 1016
BmgT120I GGNCC 7 cut(s) 149, 194, 306, 362, 1082, 1230, 1365
BmiI GGNNCC 5 cut(s) 220, 364, 464, 1366, 1413
BmrFI CCNGG 4 cut(s) 701, 1369, 1386, 1512
BmrI ACTGGG 1 cut(s) 1264
BmsI GCATC 1 cut(s) 549
BmuI ACTGGG 1 cut(s) 1264
Bpu10I CCTNAGC 2 cut(s) 249, 606
BpuEI CTTGAG 1 cut(s) 29
BpuMI CCSGG 2 cut(s) 1369, 1386
Bsa29I ATCGAT 1 cut(s) 1038
BsaJI CCNNGG 3 cut(s) 214, 527, 700
BsaWI WCCGGW 2 cut(s) 186, 1552
BsaXI ACNNNNNCTCC 4 cut(s) 602, 632, 1366, 1396
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 303, 1374
Bse1I ACTGG 2 cut(s) 696, 1259
Bse21I CCTNAGG 1 cut(s) 467
Bse3DI GCAATG 1 cut(s) 978
BseBI CCWGG 2 cut(s) 701, 1512
BseCI ATCGAT 1 cut(s) 1038
BseDI CCNNGG 3 cut(s) 214, 527, 700
BseGI GGATG 6 cut(s) 156, 454, 826, 1098, 1333, 1507
BseLI CCNNNNNNNGG 3 cut(s) 128, 303, 1374
BseMI GCAATG 1 cut(s) 978
BseMII CTCAG 5 cut(s) 458, 471, 526, 597, 773
BseNI ACTGG 2 cut(s) 696, 1259
BseRI GAGGAG 3 cut(s) 623, 1046, 1387
BseSI GKGCMC 1 cut(s) 38
BseXI GCAGC 1 cut(s) 1439
BshFI GGCC 8 cut(s) 132, 150, 195, 552, 1232, 1279, 1311, 1338
BshVI ATCGAT 1 cut(s) 1038
BsiHKAI GWGCWC 3 cut(s) 405, 996, 1017
BsiHKCI CYCGRG 1 cut(s) 1016
BsiSI CCGG 5 cut(s) 187, 1280, 1368, 1386, 1553
BslFI GGGAC 2 cut(s) 209, 1368
BslI CCNNNNNNNGG 3 cut(s) 128, 303, 1374
BsmFI GGGAC 2 cut(s) 209, 1368
BsnI GGCC 8 cut(s) 132, 150, 195, 552, 1232, 1279, 1311, 1338
BsoBI CYCGRG 1 cut(s) 1016
Bsp1286I GDGCHC 5 cut(s) 38, 405, 996, 1017, 1534
Bsp143I GATC 4 cut(s) 642, 1035, 1243, 1537
BspACI CCGC 6 cut(s) 163, 211, 446, 581, 601, 989
BspANI GGCC 8 cut(s) 132, 150, 195, 552, 1232, 1279, 1311, 1338
BspCNI CTCAG 5 cut(s) 459, 472, 525, 598, 774
BspDI ATCGAT 1 cut(s) 1038
BspLI GGNNCC 5 cut(s) 220, 364, 464, 1366, 1413
BspPI GGATC 2 cut(s) 650, 1238
BspQI GCTCTTC 1 cut(s) 513
BsrBI CCGCTC 2 cut(s) 165, 601
BsrDI GCAATG 1 cut(s) 978
BsrI ACTGG 2 cut(s) 696, 1259
BssECI CCNNGG 3 cut(s) 214, 527, 700
BssMI GATC 4 cut(s) 642, 1035, 1243, 1537
Bst2UI CCWGG 2 cut(s) 701, 1512
Bst4CI ACNGT 2 cut(s) 86, 394
Bst6I CTCTTC 6 cut(s) 51, 343, 513, 707, 810, 1234
BstC8I GCNNGC 3 cut(s) 255, 603, 1561
BstDEI CTNAG 9 cut(s) 249, 407, 467, 480, 512, 606, 782, 845, 1291
BstF5I GGATG 6 cut(s) 156, 454, 826, 1098, 1333, 1507
BstKTI GATC 4 cut(s) 645, 1038, 1246, 1540
BstMBI GATC 4 cut(s) 642, 1035, 1243, 1537
BstMWI GCNNNNNNNGC 3 cut(s) 469, 529, 611
BstNI CCWGG 2 cut(s) 701, 1512
BstNSI RCATGY 1 cut(s) 734
BstSCI CCNGG 4 cut(s) 699, 1367, 1384, 1510
BstSLI GKGCMC 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 1439
BstX2I RGATCY 2 cut(s) 642, 1243
BstXI CCANNNNNNTGG 4 cut(s) 146, 707, 1319, 1408
BstYI RGATCY 2 cut(s) 642, 1243
Bsu15I ATCGAT 1 cut(s) 1038
Bsu36I CCTNAGG 1 cut(s) 467
BsuRI GGCC 8 cut(s) 132, 150, 195, 552, 1232, 1279, 1311, 1338
BsuTUI ATCGAT 1 cut(s) 1038
BtsCI GGATG 6 cut(s) 156, 454, 826, 1098, 1333, 1507
BtsI GCAGTG 1 cut(s) 576
BtsIMutI CAGTG 3 cut(s) 520, 576, 1445
Cac8I GCNNGC 3 cut(s) 255, 603, 1561
Cfr13I GGNCC 7 cut(s) 149, 194, 306, 362, 1082, 1230, 1365
ClaI ATCGAT 1 cut(s) 1038
CseI GACGC 1 cut(s) 409
Csp6I GTAC 3 cut(s) 454, 571, 951
CviAII CATG 6 cut(s) 228, 278, 299, 731, 1402, 1535
CviQI GTAC 3 cut(s) 454, 571, 951
DdeI CTNAG 9 cut(s) 249, 407, 467, 480, 512, 606, 782, 845, 1291
DpnI GATC 4 cut(s) 644, 1037, 1245, 1539
DpnII GATC 4 cut(s) 642, 1035, 1243, 1537
DraIII CACNNNGTG 1 cut(s) 544
DrdI GACNNNNNNGTC 1 cut(s) 731
DseDI GACNNNNNNGTC 1 cut(s) 731
EaeI YGGCCR 3 cut(s) 130, 1277, 1309
Eam1104I CTCTTC 6 cut(s) 51, 343, 513, 707, 810, 1234
EarI CTCTTC 6 cut(s) 51, 343, 513, 707, 810, 1234
EciI GGCGGA 2 cut(s) 200, 461
Ecl136II GAGCTC 2 cut(s) 403, 994
Eco24I GRGCYC 3 cut(s) 405, 996, 1534
Eco47I GGWCC 4 cut(s) 306, 362, 1082, 1365
Eco53kI GAGCTC 2 cut(s) 403, 994
Eco81I CCTNAGG 1 cut(s) 467
Eco88I CYCGRG 1 cut(s) 1016
EcoICRI GAGCTC 2 cut(s) 403, 994
EcoRII CCWGG 2 cut(s) 699, 1510
EcoT22I ATGCAT 1 cut(s) 233
EcoT38I GRGCYC 3 cut(s) 405, 996, 1534
FaeI CATG 6 cut(s) 231, 281, 302, 734, 1405, 1538
FaqI GGGAC 2 cut(s) 209, 1368
FatI CATG 6 cut(s) 227, 277, 298, 730, 1401, 1534
FauI CCCGC 1 cut(s) 594
Fnu4HI GCNGC 1 cut(s) 1428
FokI GGATG 6 cut(s) 143, 461, 833, 1085, 1340, 1514
FriOI GRGCYC 3 cut(s) 405, 996, 1534
Fsp4HI GCNGC 1 cut(s) 1428
FspBI CTAG 5 cut(s) 14, 948, 1064, 1416, 1464
GluI GCNGC 1 cut(s) 1428
HaeIII GGCC 8 cut(s) 132, 150, 195, 552, 1232, 1279, 1311, 1338
HapII CCGG 5 cut(s) 187, 1280, 1368, 1386, 1553
HgaI GACGC 1 cut(s) 409
Hin1II CATG 6 cut(s) 231, 281, 302, 734, 1405, 1538
HincII GTYRAC 2 cut(s) 424, 884
HindII GTYRAC 2 cut(s) 424, 884
HindIII AAGCTT 1 cut(s) 174
HinfI GANTC 5 cut(s) 335, 717, 1073, 1287, 1435
HpaII CCGG 5 cut(s) 187, 1280, 1368, 1386, 1553
HphI GGTGA 3 cut(s) 74, 406, 995
Hpy166II GTNNAC 8 cut(s) 397, 424, 456, 508, 884, 913, 942, 1222
Hpy188I TCNGA 4 cut(s) 481, 650, 1078, 1248
Hpy188III TCNNGA 5 cut(s) 61, 382, 466, 906, 1018
Hpy8I GTNNAC 8 cut(s) 397, 424, 456, 508, 884, 913, 942, 1222
Hpy99I CGWCG 1 cut(s) 640
HpyAV CCTTC 6 cut(s) 152, 298, 379, 803, 820, 1447
HpyCH4III ACNGT 2 cut(s) 86, 394
HpyCH4IV ACGT 1 cut(s) 772
HpyCH4V TGCA 2 cut(s) 231, 971
HpyF10VI GCNNNNNNNGC 3 cut(s) 469, 529, 611
HpyF3I CTNAG 9 cut(s) 249, 407, 467, 480, 512, 606, 782, 845, 1291
HpySE526I ACGT 1 cut(s) 772
Hsp92II CATG 6 cut(s) 231, 281, 302, 734, 1405, 1538
Kzo9I GATC 4 cut(s) 642, 1035, 1243, 1537
LguI GCTCTTC 1 cut(s) 513
LmnI GCTCC 4 cut(s) 224, 408, 468, 991
Lsp1109I GCAGC 1 cut(s) 1439
LweI GCATC 1 cut(s) 549
MaeI CTAG 5 cut(s) 14, 948, 1064, 1416, 1464
MaeII ACGT 1 cut(s) 772
MaeIII GTNAC 3 cut(s) 238, 388, 1150
MalI GATC 4 cut(s) 644, 1037, 1245, 1539
MbiI CCGCTC 2 cut(s) 165, 601
MboI GATC 4 cut(s) 642, 1035, 1243, 1537
MfeI CAATTG 1 cut(s) 1225
MflI RGATCY 2 cut(s) 642, 1243
MhlI GDGCHC 5 cut(s) 38, 405, 996, 1017, 1534
MlsI TGGCCA 2 cut(s) 132, 1311
MluCI AATT 5 cut(s) 786, 927, 1225, 1349, 1567
MluNI TGGCCA 2 cut(s) 132, 1311
MlyI GAGTC 1 cut(s) 329
MmeI TCCRAC 3 cut(s) 846, 877, 1223
Mox20I TGGCCA 2 cut(s) 132, 1311
Mph1103I ATGCAT 1 cut(s) 233
MscI TGGCCA 2 cut(s) 132, 1311
MseI TTAA 5 cut(s) 672, 765, 789, 918, 1584
MslI CAYNNNNRTG 2 cut(s) 1317, 1406
Msp20I TGGCCA 2 cut(s) 132, 1311
MspI CCGG 5 cut(s) 187, 1280, 1368, 1386, 1553
MspR9I CCNGG 4 cut(s) 701, 1369, 1386, 1512
MunI CAATTG 1 cut(s) 1225
MvaI CCWGG 2 cut(s) 701, 1512
MwoI GCNNNNNNNGC 3 cut(s) 469, 529, 611
NciI CCSGG 2 cut(s) 1369, 1386
NdeII GATC 4 cut(s) 642, 1035, 1243, 1537
NlaIII CATG 6 cut(s) 231, 281, 302, 734, 1405, 1538
NlaIV GGNNCC 5 cut(s) 220, 364, 464, 1366, 1413
NmeAIII GCCGAG 3 cut(s) 195, 439, 514
NmuCI GTSAC 1 cut(s) 1150
NsiI ATGCAT 1 cut(s) 233
NspI RCATGY 1 cut(s) 734
PaeR7I CTCGAG 1 cut(s) 1016
PciI ACATGT 1 cut(s) 730
PciSI GCTCTTC 1 cut(s) 513
PfeI GAWTC 4 cut(s) 717, 1073, 1287, 1435
PfoI TCCNGGA 1 cut(s) 1367
PkrI GCNGC 1 cut(s) 1429
PleI GAGTC 1 cut(s) 329
PpsI GAGTC 1 cut(s) 329
PscI ACATGT 1 cut(s) 730
Psp124BI GAGCTC 2 cut(s) 405, 996
Psp6I CCWGG 2 cut(s) 699, 1510
PspGI CCWGG 2 cut(s) 699, 1510
PspN4I GGNNCC 5 cut(s) 220, 364, 464, 1366, 1413
PspPI GGNCC 7 cut(s) 149, 194, 306, 362, 1082, 1230, 1365
PsuI RGATCY 2 cut(s) 642, 1243
RsaI GTAC 3 cut(s) 455, 572, 952
RsaNI GTAC 3 cut(s) 454, 571, 951
RseI CAYNNNNRTG 2 cut(s) 1317, 1406
SacI GAGCTC 2 cut(s) 405, 996
SapI GCTCTTC 1 cut(s) 513
SaqAI TTAA 5 cut(s) 672, 765, 789, 918, 1584
SatI GCNGC 1 cut(s) 1428
Sau3AI GATC 4 cut(s) 642, 1035, 1243, 1537
Sau96I GGNCC 7 cut(s) 149, 194, 306, 362, 1082, 1230, 1365
ScaI AGTACT 2 cut(s) 572, 952
SchI GAGTC 1 cut(s) 329
ScrFI CCNGG 4 cut(s) 701, 1369, 1386, 1512
SduI GDGCHC 5 cut(s) 38, 405, 996, 1017, 1534
SfaNI GCATC 1 cut(s) 549
Sfr274I CTCGAG 1 cut(s) 1016
SinI GGWCC 4 cut(s) 306, 362, 1082, 1365
SlaI CTCGAG 1 cut(s) 1016
SmiMI CAYNNNNRTG 2 cut(s) 1317, 1406
SmlI CTYRAG 2 cut(s) 8, 1016
SmoI CTYRAG 2 cut(s) 8, 1016
SpeI ACTAGT 1 cut(s) 1063
Sse9I AATT 5 cut(s) 786, 927, 1225, 1349, 1567
SsiI CCGC 6 cut(s) 163, 211, 446, 581, 601, 989
SspI AATATT 2 cut(s) 760, 1579
SspMI CTAG 5 cut(s) 14, 948, 1064, 1416, 1464
SstI GAGCTC 2 cut(s) 405, 996
StyD4I CCNGG 4 cut(s) 699, 1367, 1384, 1510
TaaI ACNGT 2 cut(s) 86, 394
TaiI ACGT 1 cut(s) 775
TaqI TCGA 4 cut(s) 318, 720, 1017, 1038
TaqII GACCGA 1 cut(s) 294
TasI AATT 5 cut(s) 786, 927, 1225, 1349, 1567
TatI WGTACW 3 cut(s) 453, 570, 950
TfiI GAWTC 4 cut(s) 717, 1073, 1287, 1435
Tru1I TTAA 5 cut(s) 672, 765, 789, 918, 1584
Tru9I TTAA 5 cut(s) 672, 765, 789, 918, 1584
TscAI CASTG 3 cut(s) 520, 583, 1445
TseFI GTSAC 1 cut(s) 1150
TseI GCWGC 1 cut(s) 1427
Tsp45I GTSAC 1 cut(s) 1150
TspDTI ATGAA 7 cut(s) 280, 294, 422, 818, 822, 1418, 1518
TspGWI ACGGA 3 cut(s) 211, 375, 947
TspRI CASTG 3 cut(s) 520, 583, 1445
VpaK11BI GGWCC 4 cut(s) 306, 362, 1082, 1365
XceI RCATGY 1 cut(s) 734
XcmI CCANNNNNNNNNTGG 2 cut(s) 560, 1272
XhoI CTCGAG 1 cut(s) 1016
XspI CTAG 5 cut(s) 14, 948, 1064, 1416, 1464
ZrmI AGTACT 2 cut(s) 572, 952
Zsp2I ATGCAT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.