RchiOBHm_Chr7g0202611

Belongs to the glycosyl hydrolase 1 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
20203025 .. 20207053
4029 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18138

Sequence Viewer

Length: 387 bp
ATGAATTATGTAGGCATCAAACATTTCGTGATGATTTTGCACTTTGACTTGCCGCAAGCTCTAGAAGAGAAATATGGTGGTTACTTGAACCACTCGTTTGAATTTCTGAAGTTTAGTGAGACGGGTGTCGATTATGGGAATCCGACCTTCGTATTTTCCCTTGTTTCCGCTTTGGAATACTTAATCGATGAATTGGTAATAGTGGGCCTCTTTGGATTTCAATGTGAAATCTGGGGTGGGTCCTGTCACAAGGGGTTTGATATGAGCCTTCTTCCCCAGACCAGCCTCCAACCAGCCCTCCCCCTCCAGACCGGTCTCACCTCACCGGCCAACACCCACACCCGGCCCAACCTCGCTGCAGACCCCTCGCCAGCAGCCTACCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

128

Amino Acids

14.16

Weight (kDa)

4.92

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030447)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0202611
rosa_samantha Rh7AG199300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 53, 168
AcoI YGGCCR 1 cut(s) 327
AcsI RAATTY 1 cut(s) 101
AcuI CTGAAG 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 342
AgeI ACCGGT 1 cut(s) 311
AgsI TTSAA 3 cut(s) 88, 101, 221
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
Alw26I GTCTC 2 cut(s) 113, 320
AoxI GGCC 3 cut(s) 205, 327, 344
ApeKI GCWGC 2 cut(s) 356, 374
ApoI RAATTY 1 cut(s) 101
AsiGI ACCGGT 1 cut(s) 311
AspS9I GGNCC 3 cut(s) 205, 240, 345
AsuC2I CCSGG 1 cut(s) 343
AsuHPI GGTGA 2 cut(s) 310, 315
AvaII GGWCC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 343
BcgI CGANNNNNNTGC 2 cut(s) 348, 382
BcnI CCSGG 1 cut(s) 343
BcoDI GTCTC 2 cut(s) 113, 320
BfaI CTAG 1 cut(s) 62
BfmI CTRYAG 2 cut(s) 357, 383
BisI GCNGC 3 cut(s) 53, 357, 375
BlsI GCNGC 3 cut(s) 54, 358, 376
Bme1390I CCNGG 1 cut(s) 343
Bme18I GGWCC 1 cut(s) 240
BmgT120I GGNCC 3 cut(s) 205, 240, 345
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 1 cut(s) 343
BmsI GCATC 1 cut(s) 24
BoxI GACNNNNGTC 1 cut(s) 125
BpmI CTGGAG 1 cut(s) 290
BpuMI CCSGG 1 cut(s) 343
Bsa29I ATCGAT 1 cut(s) 186
BsaI GGTCTC 1 cut(s) 320
BsaWI WCCGGW 1 cut(s) 311
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse118I RCCGGY 2 cut(s) 311, 325
BseCI ATCGAT 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 342
BseXI GCAGC 1 cut(s) 343
BshFI GGCC 3 cut(s) 207, 329, 346
BshTI ACCGGT 1 cut(s) 311
BshVI ATCGAT 1 cut(s) 186
BsiSI CCGG 3 cut(s) 312, 326, 343
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 2 cut(s) 113, 320
BsmBI CGTCTC 1 cut(s) 113
BsnI GGCC 3 cut(s) 207, 329, 346
Bso31I GGTCTC 1 cut(s) 320
BspACI CCGC 2 cut(s) 53, 168
BspANI GGCC 3 cut(s) 207, 329, 346
BspDI ATCGAT 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 241
BspMAI CTGCAG 1 cut(s) 361
BspTNI GGTCTC 1 cut(s) 320
BsrFI RCCGGY 2 cut(s) 311, 325
BssAI RCCGGY 2 cut(s) 311, 325
Bst6I CTCTTC 1 cut(s) 60
BstC8I GCNNGC 2 cut(s) 57, 372
BstMAI GTCTC 2 cut(s) 113, 320
BstPAI GACNNNNGTC 1 cut(s) 125
BstSCI CCNGG 1 cut(s) 341
BstSFI CTRYAG 2 cut(s) 357, 383
BstV1I GCAGC 1 cut(s) 343
Bsu15I ATCGAT 1 cut(s) 186
BsuRI GGCC 3 cut(s) 207, 329, 346
BsuTUI ATCGAT 1 cut(s) 186
Cac8I GCNNGC 2 cut(s) 57, 372
Cfr10I RCCGGY 2 cut(s) 311, 325
Cfr13I GGNCC 3 cut(s) 205, 240, 345
ClaI ATCGAT 1 cut(s) 186
CspAI ACCGGT 1 cut(s) 311
CviJI RGCY 8 cut(s) 59, 207, 267, 285, 296, 329, 346, 377
CviKI_1 RGCY 8 cut(s) 59, 207, 267, 285, 296, 329, 346, 377
EaeI YGGCCR 1 cut(s) 327
Eam1104I CTCTTC 1 cut(s) 60
EarI CTCTTC 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 320
Eco47I GGWCC 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 128
EcoO109I RGGNCCY 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 113
FaiI YATR 4 cut(s) 9, 75, 135, 263
Fnu4HI GCNGC 3 cut(s) 53, 357, 375
Fsp4HI GCNGC 3 cut(s) 53, 357, 375
FspBI CTAG 1 cut(s) 62
GluI GCNGC 3 cut(s) 53, 357, 375
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 3 cut(s) 207, 329, 346
HapII CCGG 3 cut(s) 312, 326, 343
HinfI GANTC 1 cut(s) 139
HpaII CCGG 3 cut(s) 312, 326, 343
HphI GGTGA 2 cut(s) 310, 315
Hpy188I TCNGA 2 cut(s) 108, 144
Hpy188III TCNNGA 3 cut(s) 28, 62, 307
HpyAV CCTTC 2 cut(s) 157, 278
HpyCH4V TGCA 2 cut(s) 40, 359
LpnPI CCDG 9 cut(s) 217, 256, 290, 295, 306, 320, 325, 339, 356
Lsp1109I GCAGC 1 cut(s) 343
LweI GCATC 1 cut(s) 24
MaeI CTAG 1 cut(s) 62
MaeIII GTNAC 2 cut(s) 80, 245
MboII GAAGA 2 cut(s) 77, 263
MluCI AATT 3 cut(s) 4, 101, 191
MmeI TCCRAC 2 cut(s) 167, 313
MnlI CCTC 7 cut(s) 218, 296, 308, 314, 331, 362, 376
MseI TTAA 1 cut(s) 182
MspI CCGG 3 cut(s) 312, 326, 343
MspR9I CCNGG 1 cut(s) 343
NciI CCSGG 1 cut(s) 343
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 245
PfeI GAWTC 1 cut(s) 139
PinAI ACCGGT 1 cut(s) 311
PkrI GCNGC 3 cut(s) 54, 358, 376
PpuMI RGGWCCY 1 cut(s) 240
PshAI GACNNNNGTC 1 cut(s) 125
Psp5II RGGWCCY 1 cut(s) 240
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 3 cut(s) 205, 240, 345
PspPPI RGGWCCY 1 cut(s) 240
PstI CTGCAG 1 cut(s) 361
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 3 cut(s) 53, 357, 375
Sau96I GGNCC 3 cut(s) 205, 240, 345
ScrFI CCNGG 1 cut(s) 343
SetI ASST 5 cut(s) 61, 149, 323, 354, 384
SfaNI GCATC 1 cut(s) 24
SfcI CTRYAG 2 cut(s) 357, 383
SinI GGWCC 1 cut(s) 240
Sse9I AATT 3 cut(s) 4, 101, 191
SsiI CCGC 2 cut(s) 53, 168
SspMI CTAG 1 cut(s) 62
StyD4I CCNGG 1 cut(s) 341
TaqI TCGA 2 cut(s) 129, 186
TasI AATT 3 cut(s) 4, 101, 191
TauI GCSGC 1 cut(s) 55
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TseFI GTSAC 1 cut(s) 245
TseI GCWGC 2 cut(s) 356, 374
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 2 cut(s) 17, 204
VpaK11BI GGWCC 1 cut(s) 240
XapI RAATTY 1 cut(s) 101
XbaI TCTAGA 1 cut(s) 61
XspI CTAG 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.