Rh7AG199300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0030447
Physical Location & Seq
Reverse (-)
18017744 .. 18018049
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG199300.1

Sequence Viewer

Length: 306 bp
ATGAGCCTTCTTCCCCAGACCAGCCTCCAACCAGTCCTCTCCCTCCAGACCGGTCTCACCTCACCGGCCAACACCCACACCCGGCCCAACCTCGCTGCAGACCCCTCGCCTGCCCACCCGGCCCCCTCGCCAGCAGCCTACCTGCAGCGCCTCCGCGCTATTGCAACAGCTCAAGCCCAGCAGCAGCAGCACCGCCTTCGATCCAGCTCGATTCTAGCACTATTCCGGCCAGATCGCCTTCGTCTTCCTCCAGCACCATGCCTTCACAGCCCGCCTCCACCCCCACACCCCGCGCAGCGCACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

10.89

Weight (kDa)

11.91

Isoelectric Point (pI)

99.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030447)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0202611
rosa_samantha Rh7AG199300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 150
AccII CGCG 2 cut(s) 156, 293
AciI CCGC 4 cut(s) 154, 193, 272, 291
AclWI GGATC 1 cut(s) 195
AcoI YGGCCR 2 cut(s) 66, 227
AfiI CCNNNNNNNGG 1 cut(s) 81
AgeI ACCGGT 1 cut(s) 50
AluBI AGCT 2 cut(s) 170, 207
AluI AGCT 2 cut(s) 170, 207
Alw26I GTCTC 1 cut(s) 59
AlwI GGATC 1 cut(s) 195
AoxI GGCC 4 cut(s) 66, 83, 120, 227
ApeKI GCWGC 7 cut(s) 95, 134, 145, 181, 184, 187, 295
AsiGI ACCGGT 1 cut(s) 50
AspLEI GCGC 4 cut(s) 150, 158, 295, 300
AspS9I GGNCC 2 cut(s) 84, 121
AsuC2I CCSGG 2 cut(s) 82, 119
AsuHPI GGTGA 2 cut(s) 49, 54
BbsI GAAGAC 1 cut(s) 236
BbvI GCAGC 6 cut(s) 82, 146, 157, 193, 196, 199
BcgI CGANNNNNNTGC 4 cut(s) 87, 121, 179, 213
BcnI CCSGG 2 cut(s) 82, 119
BcoDI GTCTC 1 cut(s) 59
BfaI CTAG 2 cut(s) 215, 304
BfmI CTRYAG 2 cut(s) 96, 143
BfoI RGCGCY 1 cut(s) 151
BfuAI ACCTGC 1 cut(s) 150
BglI GCCNNNNNGGC 1 cut(s) 119
BisI GCNGC 7 cut(s) 96, 135, 146, 182, 185, 188, 296
BlsI GCNGC 7 cut(s) 97, 136, 147, 183, 186, 189, 297
Bme1390I CCNGG 2 cut(s) 82, 119
BmgT120I GGNCC 2 cut(s) 84, 121
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 2 cut(s) 82, 119
BpiI GAAGAC 1 cut(s) 236
BpmI CTGGAG 2 cut(s) 29, 234
BpuEI CTTGAG 1 cut(s) 156
BpuMI CCSGG 2 cut(s) 82, 119
BsaI GGTCTC 1 cut(s) 59
BsaWI WCCGGW 1 cut(s) 50
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse118I RCCGGY 2 cut(s) 50, 64
Bse1I ACTGG 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 32
BseXI GCAGC 6 cut(s) 82, 146, 157, 193, 196, 199
BseYI CCCAGC 1 cut(s) 177
Bsh1236I CGCG 2 cut(s) 156, 293
BshFI GGCC 4 cut(s) 68, 85, 122, 229
BshTI ACCGGT 1 cut(s) 50
BsiSI CCGG 5 cut(s) 51, 65, 82, 119, 226
BslI CCNNNNNNNGG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 59
BsnI GGCC 4 cut(s) 68, 85, 122, 229
Bso31I GGTCTC 1 cut(s) 59
Bsp143I GATC 2 cut(s) 200, 232
BspACI CCGC 4 cut(s) 154, 193, 272, 291
BspANI GGCC 4 cut(s) 68, 85, 122, 229
BspFNI CGCG 2 cut(s) 156, 293
BspLI GGNNCC 1 cut(s) 123
BspMAI CTGCAG 2 cut(s) 100, 147
BspMI ACCTGC 1 cut(s) 150
BspPI GGATC 1 cut(s) 195
BspTNI GGTCTC 1 cut(s) 59
BsrFI RCCGGY 2 cut(s) 50, 64
BsrI ACTGG 1 cut(s) 32
BssAI RCCGGY 2 cut(s) 50, 64
BssMI GATC 2 cut(s) 200, 232
BstC8I GCNNGC 3 cut(s) 111, 132, 272
BstFNI CGCG 2 cut(s) 156, 293
BstH2I RGCGCY 1 cut(s) 151
BstHHI GCGC 4 cut(s) 150, 158, 295, 300
BstKTI GATC 2 cut(s) 203, 235
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 2 cut(s) 200, 232
BstMWI GCNNNNNNNGC 3 cut(s) 119, 187, 267
BstSCI CCNGG 2 cut(s) 80, 117
BstSFI CTRYAG 2 cut(s) 96, 143
BstUI CGCG 2 cut(s) 156, 293
BstV1I GCAGC 6 cut(s) 82, 146, 157, 193, 196, 199
BstV2I GAAGAC 1 cut(s) 236
BsuRI GGCC 4 cut(s) 68, 85, 122, 229
BveI ACCTGC 1 cut(s) 150
Cac8I GCNNGC 3 cut(s) 111, 132, 272
CfoI GCGC 4 cut(s) 150, 158, 295, 300
Cfr10I RCCGGY 2 cut(s) 50, 64
Cfr13I GGNCC 2 cut(s) 84, 121
CspAI ACCGGT 1 cut(s) 50
CviAII CATG 1 cut(s) 258
DpnI GATC 2 cut(s) 202, 234
DpnII GATC 2 cut(s) 200, 232
EaeI YGGCCR 2 cut(s) 66, 227
Eco31I GGTCTC 1 cut(s) 59
FaeI CATG 1 cut(s) 261
FaiI YATR 1 cut(s) 259
FatI CATG 1 cut(s) 257
FauI CCCGC 2 cut(s) 279, 298
Fnu4HI GCNGC 7 cut(s) 96, 135, 146, 182, 185, 188, 296
Fsp4HI GCNGC 7 cut(s) 96, 135, 146, 182, 185, 188, 296
FspBI CTAG 2 cut(s) 215, 304
GlaI GCGC 4 cut(s) 149, 157, 294, 299
GluI GCNGC 7 cut(s) 96, 135, 146, 182, 185, 188, 296
GsaI CCCAGC 1 cut(s) 181
GsuI CTGGAG 2 cut(s) 29, 234
HaeII RGCGCY 1 cut(s) 151
HaeIII GGCC 4 cut(s) 68, 85, 122, 229
HapII CCGG 5 cut(s) 51, 65, 82, 119, 226
HhaI GCGC 4 cut(s) 150, 158, 295, 300
Hin1II CATG 1 cut(s) 261
Hin6I GCGC 4 cut(s) 148, 156, 293, 298
HinP1I GCGC 4 cut(s) 148, 156, 293, 298
HinfI GANTC 1 cut(s) 211
HpaII CCGG 5 cut(s) 51, 65, 82, 119, 226
HphI GGTGA 2 cut(s) 49, 54
Hpy188III TCNNGA 1 cut(s) 46
HpyAV CCTTC 4 cut(s) 17, 206, 248, 272
HpyCH4V TGCA 3 cut(s) 98, 145, 164
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 187, 267
Hsp92II CATG 1 cut(s) 261
HspAI GCGC 4 cut(s) 148, 156, 293, 298
Kzo9I GATC 2 cut(s) 200, 232
Lsp1109I GCAGC 6 cut(s) 82, 146, 157, 193, 196, 199
MaeI CTAG 2 cut(s) 215, 304
MalI GATC 2 cut(s) 202, 234
MboI GATC 2 cut(s) 200, 232
MboII GAAGA 1 cut(s) 236
MmeI TCCRAC 1 cut(s) 52
MspI CCGG 5 cut(s) 51, 65, 82, 119, 226
MspR9I CCNGG 2 cut(s) 82, 119
MteI GCGCNGCGC 1 cut(s) 296
MvnI CGCG 2 cut(s) 156, 293
MwoI GCNNNNNNNGC 3 cut(s) 119, 187, 267
NciI CCSGG 2 cut(s) 82, 119
NdeII GATC 2 cut(s) 200, 232
NlaIII CATG 1 cut(s) 261
NlaIV GGNNCC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 211
PinAI ACCGGT 1 cut(s) 50
PkrI GCNGC 7 cut(s) 97, 136, 147, 183, 186, 189, 297
PspFI CCCAGC 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 2 cut(s) 84, 121
PstI CTGCAG 2 cut(s) 100, 147
SatI GCNGC 7 cut(s) 96, 135, 146, 182, 185, 188, 296
Sau3AI GATC 2 cut(s) 200, 232
Sau96I GGNCC 2 cut(s) 84, 121
ScrFI CCNGG 2 cut(s) 82, 119
SetI ASST 6 cut(s) 62, 93, 144, 172, 209, 305
SfcI CTRYAG 2 cut(s) 96, 143
SmlI CTYRAG 1 cut(s) 171
SmoI CTYRAG 1 cut(s) 171
SsiI CCGC 4 cut(s) 154, 193, 272, 291
SspMI CTAG 2 cut(s) 215, 304
StyD4I CCNGG 2 cut(s) 80, 117
TaqI TCGA 2 cut(s) 199, 209
TfiI GAWTC 1 cut(s) 211
TseI GCWGC 7 cut(s) 95, 134, 145, 181, 184, 187, 295
XspI CTAG 2 cut(s) 215, 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.