RchiOBHm_Chr7g0203391

Protein transport protein sec16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0030517
Physical Location & Seq
Reverse (-)
21085460 .. 21096962
11503 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18204

Sequence Viewer

Length: 609 bp
ATGCTAGCCCAGAGGCCATTCAGGACTGAGTTATATGAATATTCAAAGGTGCTCGGAAACTCTCAGTTTATTCTTCTACCATTCCAGCCATATAAGCTCAAATATGCACACATGCTTGCTGAAGTTGGAAGAGTTTCTGATTCGTTGAAGTACTGTCAAATAATATTGAAGTCCTTAAAAACTGTTAGAGCACCTGAAGTGGAAACGTGGAAGCAGCTAGTATTGTCTCTAGAGGAGAGGATCAGAACTCATCAGCAGGGTGGATACTCTGTAAATCTGGTTTCTACTTTCAAAGGTAAATTGCTCAACTTTATCGATACTACTGCCCATCGTGTTGTTGGGAGCCTACCACCACCTGCACCATCCACATCCCAAGGAAGTGTTCACGGTAATCATTACCAACAGCCAATGGGTCCTAGAGTATCTAGTAGTCAATCAACTATGGCAATGTCATCCTTAATTCCTTCTGCTTCTATGGAACCCATAAGTGATTTTGGCAATAGAAAGCTGATGCATAATAGAAGTGTTTCAGAGCCAGACTTTGGCAGAACTCAGGTTGATTCATCAAAGGAAATGGCCTCGCCTGATGGACAGGGAAAAGCCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec16 Sec16_C

Protein Analysis

202

Amino Acids

22.44

Weight (kDa)

9.57

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_Sec16 PF12931 8 - 87 2.4e-13 Sec16 Sec23-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030517)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0203391
rosa_multiflora Rmu_co8373897.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 364
Acc36I ACCTGC 1 cut(s) 364
AccB7I CCANNNNNTGG 1 cut(s) 542
AclWI GGATC 1 cut(s) 248
AcuI CTGAAG 2 cut(s) 141, 216
AfaI GTAC 1 cut(s) 152
AfiI CCNNNNNNNGG 1 cut(s) 542
AgsI TTSAA 4 cut(s) 45, 148, 169, 292
AjuI GAANNNNNNNTTGG 2 cut(s) 366, 398
AluBI AGCT 3 cut(s) 97, 217, 508
AluI AGCT 3 cut(s) 97, 217, 508
Alw21I GWGCWC 2 cut(s) 54, 193
Alw26I GTCTC 1 cut(s) 231
AlwI GGATC 1 cut(s) 248
AoxI GGCC 2 cut(s) 14, 576
ApeKI GCWGC 1 cut(s) 214
Asp700I GAANNNNTTC 2 cut(s) 133, 526
AspS9I GGNCC 1 cut(s) 413
AsuNHI GCTAGC 1 cut(s) 4
AvaII GGWCC 1 cut(s) 413
Bbv12I GWGCWC 2 cut(s) 54, 193
BbvI GCAGC 1 cut(s) 226
BccI CCATC 3 cut(s) 336, 370, 581
BcgI CGANNNNNNTGC 2 cut(s) 305, 339
BciVI GTATCC 1 cut(s) 257
BcoDI GTCTC 1 cut(s) 231
BfaI CTAG 5 cut(s) 5, 218, 230, 417, 426
BfuAI ACCTGC 1 cut(s) 364
BfuI GTATCC 1 cut(s) 257
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
BmcAI AGTACT 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 3 cut(s) 344, 414, 480
BmsI GCATC 1 cut(s) 501
BmtI GCTAGC 1 cut(s) 8
Bsa29I ATCGAT 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 373
Bsc4I CCNNNNNNNGG 1 cut(s) 542
Bse3DI GCAATG 1 cut(s) 453
BseCI ATCGAT 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 373
BseGI GGATG 3 cut(s) 362, 368, 452
BseLI CCNNNNNNNGG 1 cut(s) 542
BseMI GCAATG 1 cut(s) 453
BseMII CTCAG 3 cut(s) 18, 77, 566
BseRI GAGGAG 1 cut(s) 248
BseXI GCAGC 1 cut(s) 226
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 2 cut(s) 16, 578
BshVI ATCGAT 1 cut(s) 315
BsiHKAI GWGCWC 2 cut(s) 54, 193
BslI CCNNNNNNNGG 1 cut(s) 542
BsmAI GTCTC 1 cut(s) 231
BsnI GGCC 2 cut(s) 16, 578
Bsp1286I GDGCHC 2 cut(s) 54, 193
Bsp143I GATC 1 cut(s) 240
BspANI GGCC 2 cut(s) 16, 578
BspCNI CTCAG 3 cut(s) 19, 76, 565
BspDI ATCGAT 1 cut(s) 315
BspHI TCATGA 1 cut(s) 605
BspLI GGNNCC 3 cut(s) 344, 414, 480
BspMI ACCTGC 1 cut(s) 364
BspOI GCTAGC 1 cut(s) 8
BspPI GGATC 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 453
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 373
Bst4CI ACNGT 3 cut(s) 155, 184, 389
Bst6I CTCTTC 1 cut(s) 124
BstC8I GCNNGC 2 cut(s) 6, 117
BstDEI CTNAG 3 cut(s) 27, 63, 552
BstF5I GGATG 3 cut(s) 362, 368, 452
BstKTI GATC 1 cut(s) 243
BstMAI GTCTC 1 cut(s) 231
BstMBI GATC 1 cut(s) 240
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstNSI RCATGY 1 cut(s) 115
BstV1I GCAGC 1 cut(s) 226
Bsu15I ATCGAT 1 cut(s) 315
BsuI GTATCC 1 cut(s) 257
BsuRI GGCC 2 cut(s) 16, 578
BsuTUI ATCGAT 1 cut(s) 315
BtsCI GGATG 3 cut(s) 362, 368, 452
BveI ACCTGC 1 cut(s) 364
Cac8I GCNNGC 2 cut(s) 6, 117
CciI TCATGA 1 cut(s) 605
Cfr13I GGNCC 1 cut(s) 413
ClaI ATCGAT 1 cut(s) 315
Csp6I GTAC 1 cut(s) 151
CviAII CATG 2 cut(s) 112, 606
CviQI GTAC 1 cut(s) 151
DdeI CTNAG 3 cut(s) 27, 63, 552
DpnI GATC 1 cut(s) 242
DpnII GATC 1 cut(s) 240
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
Eco130I CCWWGG 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 413
Eco57I CTGAAG 2 cut(s) 141, 216
EcoO109I RGGNCCY 1 cut(s) 413
EcoT14I CCWWGG 1 cut(s) 373
EcoT22I ATGCAT 1 cut(s) 516
ErhI CCWWGG 1 cut(s) 373
FaeI CATG 2 cut(s) 115, 609
FatI CATG 2 cut(s) 111, 605
Fnu4HI GCNGC 1 cut(s) 215
FokI GGATG 3 cut(s) 349, 355, 439
Fsp4HI GCNGC 1 cut(s) 215
FspBI CTAG 5 cut(s) 5, 218, 230, 417, 426
GluI GCNGC 1 cut(s) 215
HaeIII GGCC 2 cut(s) 16, 578
Hin1II CATG 2 cut(s) 115, 609
HinfI GANTC 2 cut(s) 140, 560
Hpy166II GTNNAC 1 cut(s) 385
Hpy188I TCNGA 4 cut(s) 56, 139, 245, 532
Hpy188III TCNNGA 3 cut(s) 22, 230, 606
Hpy8I GTNNAC 1 cut(s) 385
HpyAV CCTTC 1 cut(s) 474
HpyCH4III ACNGT 3 cut(s) 155, 184, 389
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 3 cut(s) 107, 359, 514
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpyF3I CTNAG 3 cut(s) 27, 63, 552
HpySE526I ACGT 1 cut(s) 206
Hsp92II CATG 2 cut(s) 115, 609
Kzo9I GATC 1 cut(s) 240
LmnI GCTCC 1 cut(s) 342
Lsp1109I GCAGC 1 cut(s) 226
LweI GCATC 1 cut(s) 501
MaeI CTAG 5 cut(s) 5, 218, 230, 417, 426
MaeII ACGT 1 cut(s) 206
MalI GATC 1 cut(s) 242
MboI GATC 1 cut(s) 240
MboII GAAGA 2 cut(s) 65, 141
MhlI GDGCHC 2 cut(s) 54, 193
MluCI AATT 2 cut(s) 299, 459
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 4 cut(s) 6, 226, 231, 589
Mph1103I ATGCAT 1 cut(s) 516
MroXI GAANNNNTTC 2 cut(s) 133, 526
MseI TTAA 2 cut(s) 176, 458
MwoI GCNNNNNNNGC 1 cut(s) 94
NdeII GATC 1 cut(s) 240
NheI GCTAGC 1 cut(s) 4
NlaIII CATG 2 cut(s) 115, 609
NlaIV GGNNCC 3 cut(s) 344, 414, 480
NsiI ATGCAT 1 cut(s) 516
NspI RCATGY 1 cut(s) 115
PagI TCATGA 1 cut(s) 605
PaqCI CACCTGC 1 cut(s) 364
PdmI GAANNNNTTC 2 cut(s) 133, 526
PfeI GAWTC 2 cut(s) 140, 560
PflMI CCANNNNNTGG 1 cut(s) 542
PkrI GCNGC 1 cut(s) 216
PpuMI RGGWCCY 1 cut(s) 413
Psp5II RGGWCCY 1 cut(s) 413
PspN4I GGNNCC 3 cut(s) 344, 414, 480
PspPI GGNCC 1 cut(s) 413
PspPPI RGGWCCY 1 cut(s) 413
RsaI GTAC 1 cut(s) 152
RsaNI GTAC 1 cut(s) 151
SaqAI TTAA 2 cut(s) 176, 458
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 1 cut(s) 240
Sau96I GGNCC 1 cut(s) 413
ScaI AGTACT 1 cut(s) 152
SduI GDGCHC 2 cut(s) 54, 193
SetI ASST 9 cut(s) 51, 99, 196, 209, 219, 298, 358, 510, 558
SfaNI GCATC 1 cut(s) 501
SinI GGWCC 1 cut(s) 413
Sse9I AATT 2 cut(s) 299, 459
SspI AATATT 2 cut(s) 41, 165
SspMI CTAG 5 cut(s) 5, 218, 230, 417, 426
StyI CCWWGG 1 cut(s) 373
TaaI ACNGT 3 cut(s) 155, 184, 389
TaiI ACGT 1 cut(s) 209
TaqI TCGA 1 cut(s) 315
TasI AATT 2 cut(s) 299, 459
TatI WGTACW 1 cut(s) 150
TfiI GAWTC 2 cut(s) 140, 560
Tru1I TTAA 2 cut(s) 176, 458
Tru9I TTAA 2 cut(s) 176, 458
TseI GCWGC 1 cut(s) 214
TspDTI ATGAA 2 cut(s) 51, 552
Van91I CCANNNNNTGG 1 cut(s) 542
VpaK11BI GGWCC 1 cut(s) 413
XbaI TCTAGA 1 cut(s) 229
XceI RCATGY 1 cut(s) 115
XcmI CCANNNNNNNNNTGG 1 cut(s) 335
XmnI GAANNNNTTC 2 cut(s) 133, 526
XspI CTAG 5 cut(s) 5, 218, 230, 417, 426
ZrmI AGTACT 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.