Rmu_co8373897.1_g000001

Protein transport protein sec16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8373897.1
OG0030517
Physical Location & Seq
Reverse (-)
1 .. 769
769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8373897.1_g000001.1.cds

Sequence Viewer

Length: 586 bp
atgctggccgaagtaggaaaacttgctgatgctttgaaatattgtcaagcaattttgaagtctttgaaaactgctcgagcacctgaggtggacacatggagagagttggtgtcatctctggaggagcggataagagcccaccagcagggtggttatagcataaatttggctccaaccaagttgatgggtaaattgcgtacattcattgatagtactgctcatcgtgttgttggggggctacctccacctataccgtcaacagcaccaggctttcctcagcttaatgaacatgctcatcaactacctccacctataccatcaacagcaccaggcttccctcagcttaatgaacttgctcatcaactacctccacctataccatcaacagcaccgggctttgctaagcttaatgaacatgctcatcaaccagtaaatccaaatgtacccaacagtcaatcgacaatggttatgtcttcattaatgccttcagcatcaatggagccaataagtgaaaggacttctgagagcaaccaactgaatatgcctaacagaagcatttcagagccagactttgggaaaagcccga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec16 Sec16_C

Protein Analysis

195

Amino Acids

21.07

Weight (kDa)

7.07

Isoelectric Point (pI)

51.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030517)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0203391
rosa_multiflora Rmu_co8373897.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 572
AccBSI CCGCTC 1 cut(s) 127
AciI CCGC 1 cut(s) 127
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 471
AfaI GTAC 3 cut(s) 199, 214, 444
AfiI CCNNNNNNNGG 2 cut(s) 145, 572
AgsI TTSAA 3 cut(s) 37, 58, 67
AjnI CCWGG 2 cut(s) 265, 328
AluBI AGCT 3 cut(s) 280, 343, 406
AluI AGCT 3 cut(s) 280, 343, 406
Alw21I GWGCWC 1 cut(s) 82
Ama87I CYCGRG 1 cut(s) 75
AoxI GGCC 1 cut(s) 6
ApoI RAATTY 1 cut(s) 163
AseI ATTAAT 1 cut(s) 479
Asp700I GAANNNNTTC 1 cut(s) 556
AsuC2I CCSGG 1 cut(s) 393
AvaI CYCGRG 1 cut(s) 75
AxyI CCTNAGG 1 cut(s) 84
BanII GRGCYC 1 cut(s) 139
BbsI GAAGAC 1 cut(s) 465
Bbv12I GWGCWC 1 cut(s) 82
BbvCI CCTCAGC 2 cut(s) 276, 339
BccI CCATC 3 cut(s) 178, 325, 388
BciT130I CCWGG 2 cut(s) 267, 330
BcnI CCSGG 1 cut(s) 393
BlpI GCTNAGC 1 cut(s) 402
BmcAI AGTACT 1 cut(s) 214
Bme1390I CCNGG 3 cut(s) 267, 330, 393
BmeT110I CYCGRG 1 cut(s) 75
BmiI GGNNCC 2 cut(s) 171, 501
BmrFI CCNGG 3 cut(s) 267, 330, 393
BmsI GCATC 2 cut(s) 19, 500
BpiI GAAGAC 1 cut(s) 465
BpmI CTGGAG 1 cut(s) 140
Bpu10I CCTNAGC 2 cut(s) 276, 339
Bpu1102I GCTNAGC 1 cut(s) 402
BpuMI CCSGG 1 cut(s) 393
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 572
Bse1I ACTGG 1 cut(s) 428
Bse21I CCTNAGG 1 cut(s) 84
BseBI CCWGG 2 cut(s) 267, 330
BseLI CCNNNNNNNGG 2 cut(s) 145, 572
BseMII CTCAG 4 cut(s) 75, 290, 353, 513
BseNI ACTGG 1 cut(s) 428
BseRI GAGGAG 1 cut(s) 137
BshFI GGCC 1 cut(s) 8
BsiHKAI GWGCWC 1 cut(s) 82
BsiHKCI CYCGRG 1 cut(s) 75
BsiSI CCGG 1 cut(s) 392
BslI CCNNNNNNNGG 2 cut(s) 145, 572
BsnI GGCC 1 cut(s) 8
BsoBI CYCGRG 1 cut(s) 75
Bsp1286I GDGCHC 2 cut(s) 82, 139
Bsp1720I GCTNAGC 1 cut(s) 402
BspACI CCGC 1 cut(s) 127
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 4 cut(s) 76, 289, 352, 514
BspLI GGNNCC 2 cut(s) 171, 501
BsrBI CCGCTC 1 cut(s) 127
BsrI ACTGG 1 cut(s) 428
Bst2UI CCWGG 2 cut(s) 267, 330
Bst4CI ACNGT 2 cut(s) 255, 452
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 5 cut(s) 84, 276, 339, 402, 522
BstNI CCWGG 2 cut(s) 267, 330
BstNSI RCATGY 2 cut(s) 293, 419
BstSCI CCNGG 3 cut(s) 265, 328, 391
BstV2I GAAGAC 1 cut(s) 465
BstXI CCANNNNNNTGG 2 cut(s) 149, 184
Bsu36I CCTNAGG 1 cut(s) 84
BsuRI GGCC 1 cut(s) 8
Cac8I GCNNGC 1 cut(s) 6
Csp6I GTAC 3 cut(s) 198, 213, 443
CviAII CATG 3 cut(s) 96, 290, 416
CviQI GTAC 3 cut(s) 198, 213, 443
DdeI CTNAG 5 cut(s) 84, 276, 339, 402, 522
EaeI YGGCCR 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 139
Eco57I CTGAAG 1 cut(s) 471
Eco81I CCTNAGG 1 cut(s) 84
Eco88I CYCGRG 1 cut(s) 75
EcoRII CCWGG 2 cut(s) 265, 328
EcoT38I GRGCYC 1 cut(s) 139
FaeI CATG 3 cut(s) 99, 293, 419
FatI CATG 3 cut(s) 95, 289, 415
FriOI GRGCYC 1 cut(s) 139
GsuI CTGGAG 1 cut(s) 140
HaeIII GGCC 1 cut(s) 8
HapII CCGG 1 cut(s) 392
Hin1II CATG 3 cut(s) 99, 293, 419
HincII GTYRAC 1 cut(s) 258
HindII GTYRAC 1 cut(s) 258
HindIII AAGCTT 1 cut(s) 404
HpaII CCGG 1 cut(s) 392
Hpy166II GTNNAC 2 cut(s) 91, 258
Hpy188I TCNGA 2 cut(s) 523, 562
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 2 cut(s) 91, 258
HpyAV CCTTC 1 cut(s) 495
HpyCH4III ACNGT 2 cut(s) 255, 452
HpyF3I CTNAG 5 cut(s) 84, 276, 339, 402, 522
Hsp92II CATG 3 cut(s) 99, 293, 419
LmnI GCTCC 3 cut(s) 124, 175, 499
LweI GCATC 2 cut(s) 19, 500
MbiI CCGCTC 1 cut(s) 127
MboII GAAGA 1 cut(s) 465
MhlI GDGCHC 2 cut(s) 82, 139
MluCI AATT 3 cut(s) 51, 163, 191
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 7 cut(s) 79, 115, 252, 285, 315, 348, 378
MroXI GAANNNNTTC 1 cut(s) 556
MseI TTAA 4 cut(s) 282, 345, 408, 479
MspI CCGG 1 cut(s) 392
MspR9I CCNGG 3 cut(s) 267, 330, 393
MvaI CCWGG 2 cut(s) 267, 330
NciI CCSGG 1 cut(s) 393
NlaIII CATG 3 cut(s) 99, 293, 419
NlaIV GGNNCC 2 cut(s) 171, 501
NspI RCATGY 2 cut(s) 293, 419
PaeR7I CTCGAG 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 556
PflMI CCANNNNNTGG 1 cut(s) 572
PshBI ATTAAT 1 cut(s) 479
Psp6I CCWGG 2 cut(s) 265, 328
PspGI CCWGG 2 cut(s) 265, 328
PspN4I GGNNCC 2 cut(s) 171, 501
PspXI VCTCGAGB 1 cut(s) 75
RsaI GTAC 3 cut(s) 199, 214, 444
RsaNI GTAC 3 cut(s) 198, 213, 443
SaqAI TTAA 4 cut(s) 282, 345, 408, 479
ScaI AGTACT 1 cut(s) 214
ScrFI CCNGG 3 cut(s) 267, 330, 393
SduI GDGCHC 2 cut(s) 82, 139
SfaNI GCATC 2 cut(s) 19, 500
Sfr274I CTCGAG 1 cut(s) 75
SlaI CTCGAG 1 cut(s) 75
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
Sse9I AATT 3 cut(s) 51, 163, 191
SsiI CCGC 1 cut(s) 127
SspI AATATT 1 cut(s) 41
StyD4I CCNGG 3 cut(s) 265, 328, 391
TaaI ACNGT 2 cut(s) 255, 452
TaqI TCGA 2 cut(s) 76, 458
TasI AATT 3 cut(s) 51, 163, 191
TatI WGTACW 1 cut(s) 212
Tru1I TTAA 4 cut(s) 282, 345, 408, 479
Tru9I TTAA 4 cut(s) 282, 345, 408, 479
TspDTI ATGAA 5 cut(s) 193, 300, 363, 426, 465
Van91I CCANNNNNTGG 1 cut(s) 572
VspI ATTAAT 1 cut(s) 479
XapI RAATTY 1 cut(s) 163
XceI RCATGY 2 cut(s) 293, 419
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XhoI CTCGAG 1 cut(s) 75
XmnI GAANNNNTTC 1 cut(s) 556
ZrmI AGTACT 1 cut(s) 214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.