RchiOBHm_Chr7g0207091

Leucine Rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0030493
Physical Location & Seq
Reverse (-)
24525879 .. 24527394
1516 bp
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UTR
Exon/CDS
Intron
PRQ18533

Sequence Viewer

Length: 639 bp
ATGATCATTCCCAAGTTCATTGGCTCTTTGAGTCAATTGAAAGAACTCAAACTTGCAGGTGCTAATTTCAGTGGACCTGTTCCTCCCCAACTGGGAAACCTCTCTAATTTGCACACTCTTGATCTTTCCTCCAATGATTTTGAAGGAATGATGATTCCCAAATTCATTGGCTCTCTGAGTCAATTGAAAGAACTCAAACTTGCAGATGCTAATTTCGGTGGACCTGTTCCTCCCCAACTTGGAAACCTCTCTAATTTGCACACTCTTGATCTTTACCGGAACGATGGTGTTAGTTCTGAAAATCTTGAGTGGTTATCTCATCTTTCTTCCTTGAGATACCTAAACATGTCATATCTAGATTTGTCAAAGGTTGTGAATTGGCCACTATCTTTAAGCAAGCTCACTTTACTGACAGAGCTTCAGTTATCCGTGTGTTACCTTCCTGATTGCCATCCTGTTCTCCTATGCTCAGGGAGTTGTATCTCTCGAATAACATGTTTTCTGAGCCGTGTCTTCCTTTTGTGCAATGTAGGCTCCAATTTAGAGTATCTTGACATTTCTAAGAACCTATTGTCTGGGAGCTTCCTAATTGTTGGATGCAATTTCAAAATTTGTATCTATTCAATTTGGAAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

212

Amino Acids

23.43

Weight (kDa)

6.41

Isoelectric Point (pI)

22.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 5 - 143 4.3e-16 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030493)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0207091 RchiOBHm_Chr7g0207171

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 47
Acc36I ACCTGC 1 cut(s) 47
AcoI YGGCCR 1 cut(s) 380
AcsI RAATTY 2 cut(s) 161, 609
AcuI CTGAAG 1 cut(s) 404
AfiI CCNNNNNNNGG 2 cut(s) 92, 239
AflIII ACRYGT 2 cut(s) 345, 494
AgsI TTSAA 5 cut(s) 40, 143, 187, 607, 624
AluBI AGCT 3 cut(s) 400, 418, 582
AluI AGCT 3 cut(s) 400, 418, 582
AoxI GGCC 1 cut(s) 380
ApoI RAATTY 2 cut(s) 161, 609
AspS9I GGNCC 2 cut(s) 74, 221
AvaII GGWCC 2 cut(s) 74, 221
BalI TGGCCA 1 cut(s) 382
BbsI GAAGAC 1 cut(s) 505
BccI CCATC 2 cut(s) 278, 459
BceAI ACGGC 1 cut(s) 492
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 356
BfuAI ACCTGC 1 cut(s) 47
Bme18I GGWCC 2 cut(s) 74, 221
BmgT120I GGNCC 2 cut(s) 74, 221
BmiI GGNNCC 1 cut(s) 535
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 2 cut(s) 196, 587
BmuI ACTGGG 1 cut(s) 101
BpiI GAAGAC 1 cut(s) 505
Bpu10I CCTNAGC 1 cut(s) 469
BpuEI CTTGAG 2 cut(s) 326, 352
BsaBI GATNNNNATC 1 cut(s) 450
BsaWI WCCGGW 1 cut(s) 276
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 239
Bse1I ACTGG 1 cut(s) 96
Bse3DI GCAATG 1 cut(s) 532
Bse8I GATNNNNATC 1 cut(s) 450
BseGI GGATG 2 cut(s) 451, 602
BseJI GATNNNNATC 1 cut(s) 450
BseLI CCNNNNNNNGG 2 cut(s) 92, 239
BseMI GCAATG 1 cut(s) 532
BseMII CTCAG 3 cut(s) 167, 483, 494
BseNI ACTGG 1 cut(s) 96
BshFI GGCC 1 cut(s) 382
BsiSI CCGG 1 cut(s) 277
BslI CCNNNNNNNGG 2 cut(s) 92, 239
BsnI GGCC 1 cut(s) 382
Bsp143I GATC 3 cut(s) 3, 121, 268
BspANI GGCC 1 cut(s) 382
BspCNI CTCAG 3 cut(s) 168, 482, 495
BspLI GGNNCC 1 cut(s) 535
BspMI ACCTGC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 532
BsrI ACTGG 1 cut(s) 96
BssMI GATC 3 cut(s) 3, 121, 268
BstC8I GCNNGC 1 cut(s) 398
BstDEI CTNAG 4 cut(s) 176, 469, 503, 561
BstF5I GGATG 2 cut(s) 451, 602
BstKTI GATC 3 cut(s) 6, 124, 271
BstMBI GATC 3 cut(s) 3, 121, 268
BstMWI GCNNNNNNNGC 1 cut(s) 531
BstNSI RCATGY 2 cut(s) 349, 498
BstV2I GAAGAC 1 cut(s) 505
BsuRI GGCC 1 cut(s) 382
BtsCI GGATG 2 cut(s) 451, 602
BtsIMutI CAGTG 1 cut(s) 76
BveI ACCTGC 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 398
Cfr13I GGNCC 2 cut(s) 74, 221
CviAII CATG 2 cut(s) 346, 495
CviJI RGCY 8 cut(s) 24, 171, 382, 400, 418, 507, 534, 582
CviKI_1 RGCY 8 cut(s) 24, 171, 382, 400, 418, 507, 534, 582
DdeI CTNAG 4 cut(s) 176, 469, 503, 561
DpnI GATC 3 cut(s) 5, 123, 270
DpnII GATC 3 cut(s) 3, 121, 268
EaeI YGGCCR 1 cut(s) 380
Eco47I GGWCC 2 cut(s) 74, 221
Eco57I CTGAAG 1 cut(s) 404
FaeI CATG 2 cut(s) 349, 498
FaiI YATR 4 cut(s) 347, 352, 466, 496
FatI CATG 2 cut(s) 345, 494
FbaI TGATCA 1 cut(s) 3
FokI GGATG 2 cut(s) 438, 609
FspBI CTAG 1 cut(s) 356
HaeIII GGCC 1 cut(s) 382
HapII CCGG 1 cut(s) 277
Hin1II CATG 2 cut(s) 349, 498
HinfI GANTC 3 cut(s) 31, 154, 178
HpaII CCGG 1 cut(s) 277
Hpy166II GTNNAC 2 cut(s) 74, 221
Hpy188I TCNGA 3 cut(s) 177, 298, 504
Hpy188III TCNNGA 7 cut(s) 119, 266, 305, 356, 443, 486, 551
Hpy8I GTNNAC 2 cut(s) 74, 221
HpyAV CCTTC 2 cut(s) 137, 449
HpyCH4V TGCA 6 cut(s) 56, 112, 203, 259, 525, 600
HpyF10VI GCNNNNNNNGC 1 cut(s) 531
HpyF3I CTNAG 4 cut(s) 176, 469, 503, 561
Hsp92II CATG 2 cut(s) 349, 498
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 121, 268
LmnI GCTCC 2 cut(s) 539, 579
LpnPI CCDG 9 cut(s) 42, 77, 90, 237, 290, 456, 456, 468, 561
LweI GCATC 2 cut(s) 196, 587
MaeI CTAG 1 cut(s) 356
MaeIII GTNAC 1 cut(s) 434
MalI GATC 3 cut(s) 5, 123, 270
MboI GATC 3 cut(s) 3, 121, 268
MboII GAAGA 2 cut(s) 318, 505
MfeI CAATTG 2 cut(s) 35, 182
MlsI TGGCCA 1 cut(s) 382
MluNI TGGCCA 1 cut(s) 382
MlyI GAGTC 2 cut(s) 40, 187
MmeI TCCRAC 1 cut(s) 574
MnlI CCTC 5 cut(s) 93, 110, 139, 240, 257
Mox20I TGGCCA 1 cut(s) 382
MscI TGGCCA 1 cut(s) 382
MseI TTAA 1 cut(s) 392
Msp20I TGGCCA 1 cut(s) 382
MspI CCGG 1 cut(s) 277
MunI CAATTG 2 cut(s) 35, 182
MwoI GCNNNNNNNGC 1 cut(s) 531
NdeII GATC 3 cut(s) 3, 121, 268
NlaIII CATG 2 cut(s) 349, 498
NlaIV GGNNCC 1 cut(s) 535
NspI RCATGY 2 cut(s) 349, 498
PaqCI CACCTGC 1 cut(s) 47
PciI ACATGT 2 cut(s) 345, 494
PfeI GAWTC 1 cut(s) 154
PleI GAGTC 2 cut(s) 39, 186
PpsI GAGTC 2 cut(s) 39, 186
PscI ACATGT 2 cut(s) 345, 494
PspN4I GGNNCC 1 cut(s) 535
PspPI GGNCC 2 cut(s) 74, 221
SaqAI TTAA 1 cut(s) 392
Sau3AI GATC 3 cut(s) 3, 121, 268
Sau96I GGNCC 2 cut(s) 74, 221
SchI GAGTC 2 cut(s) 40, 187
SfaNI GCATC 2 cut(s) 196, 587
SinI GGWCC 2 cut(s) 74, 221
SmlI CTYRAG 2 cut(s) 305, 331
SmoI CTYRAG 2 cut(s) 305, 331
SspMI CTAG 1 cut(s) 356
TaqI TCGA 1 cut(s) 487
TfiI GAWTC 1 cut(s) 154
Tru1I TTAA 1 cut(s) 392
Tru9I TTAA 1 cut(s) 392
TscAI CASTG 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 7, 154
TspGWI ACGGA 1 cut(s) 418
TspRI CASTG 1 cut(s) 76
VpaK11BI GGWCC 2 cut(s) 74, 221
XapI RAATTY 2 cut(s) 161, 609
XbaI TCTAGA 1 cut(s) 355
XceI RCATGY 2 cut(s) 349, 498
XspI CTAG 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.