RchiOBHm_Chr7g0207171

Leucine Rich repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0030493
Physical Location & Seq
Reverse (-)
24582959 .. 24583438
480 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18540

Sequence Viewer

Length: 480 bp
ATGATGATTCCCAAATTCATTGGCTCTCTGAGTCAATTGAAAGAACTCAATCTTGCAGATGCTAATTTCAGTGGACCTGTTCCTCCCCAACTTAGAAACCTCTCTAATTTGCACACTCTTGATCTTTCCTCCAATGATTTTGAAGGAAAGATGATTCCCAAATTCATTGGCTCTCTGAGTCAATTGAAAGAACTCAATCTTGCATATGCTAAATTCAGTGGACCTGTTCCTCCCCAACTTGGAAACCTCTCTAATTTGCACACTCTTGATCTTCCCTCCAATGATTTTGAAGGAATGATGATTCCCAAATTCATTGGCTTTCTGAGTCAATTGAAAGAACTCAAACTTGCAGAAGCTAATTTCAGTGGACCTGTTCCTCCCCAACTTGAAAACCTCTCTAATTTGCACACTCTTGATCTTTCCTCCAATGATTTTGAAGGAATGATGATTCCCAAATTCATTGGTCTCTGGGTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

159

Amino Acids

17.54

Weight (kDa)

5.26

Isoelectric Point (pI)

29.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 5 - 114 6.7e-12 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030493)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0207091 RchiOBHm_Chr7g0207171

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 5 cut(s) 14, 161, 212, 308, 455
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 7 cut(s) 40, 143, 187, 290, 334, 389, 437
AluBI AGCT 1 cut(s) 356
AluI AGCT 1 cut(s) 356
Alw26I GTCTC 1 cut(s) 470
ApoI RAATTY 5 cut(s) 14, 161, 212, 308, 455
AspS9I GGNCC 3 cut(s) 74, 221, 368
AvaII GGWCC 3 cut(s) 74, 221, 368
BcoDI GTCTC 1 cut(s) 470
Bme18I GGWCC 3 cut(s) 74, 221, 368
BmgT120I GGNCC 3 cut(s) 74, 221, 368
BmsI GCATC 1 cut(s) 49
BsaI GGTCTC 1 cut(s) 470
Bsc4I CCNNNNNNNGG 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMII CTCAG 3 cut(s) 20, 167, 314
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 470
Bso31I GGTCTC 1 cut(s) 470
Bsp143I GATC 3 cut(s) 121, 268, 415
BspCNI CTCAG 3 cut(s) 21, 168, 315
BspTNI GGTCTC 1 cut(s) 470
BssMI GATC 3 cut(s) 121, 268, 415
BstDEI CTNAG 4 cut(s) 29, 92, 176, 323
BstKTI GATC 3 cut(s) 124, 271, 418
BstMAI GTCTC 1 cut(s) 470
BstMBI GATC 3 cut(s) 121, 268, 415
BtsIMutI CAGTG 3 cut(s) 76, 223, 370
Cfr13I GGNCC 3 cut(s) 74, 221, 368
CviJI RGCY 4 cut(s) 24, 171, 318, 356
CviKI_1 RGCY 4 cut(s) 24, 171, 318, 356
DdeI CTNAG 4 cut(s) 29, 92, 176, 323
DpnI GATC 3 cut(s) 123, 270, 417
DpnII GATC 3 cut(s) 121, 268, 415
Eco31I GGTCTC 1 cut(s) 470
Eco47I GGWCC 3 cut(s) 74, 221, 368
FaiI YATR 2 cut(s) 205, 207
FauNDI CATATG 1 cut(s) 205
HinfI GANTC 7 cut(s) 7, 31, 154, 178, 301, 325, 448
Hpy166II GTNNAC 3 cut(s) 74, 221, 368
Hpy188I TCNGA 3 cut(s) 30, 177, 324
Hpy188III TCNNGA 3 cut(s) 119, 266, 413
Hpy8I GTNNAC 3 cut(s) 74, 221, 368
HpyAV CCTTC 3 cut(s) 137, 284, 431
HpyCH4V TGCA 6 cut(s) 56, 112, 203, 259, 350, 406
HpyF3I CTNAG 4 cut(s) 29, 92, 176, 323
Kzo9I GATC 3 cut(s) 121, 268, 415
LpnPI CCDG 4 cut(s) 90, 237, 384, 454
LweI GCATC 1 cut(s) 49
MalI GATC 3 cut(s) 123, 270, 417
MboI GATC 3 cut(s) 121, 268, 415
MboII GAAGA 1 cut(s) 263
MfeI CAATTG 4 cut(s) 35, 182, 329, 475
MlyI GAGTC 3 cut(s) 40, 187, 334
MnlI CCTC 9 cut(s) 93, 110, 139, 240, 257, 286, 387, 404, 433
MunI CAATTG 4 cut(s) 35, 182, 329, 475
NdeI CATATG 1 cut(s) 205
NdeII GATC 3 cut(s) 121, 268, 415
PfeI GAWTC 4 cut(s) 7, 154, 301, 448
PleI GAGTC 3 cut(s) 39, 186, 333
PpsI GAGTC 3 cut(s) 39, 186, 333
PspPI GGNCC 3 cut(s) 74, 221, 368
Sau3AI GATC 3 cut(s) 121, 268, 415
Sau96I GGNCC 3 cut(s) 74, 221, 368
SchI GAGTC 3 cut(s) 40, 187, 334
SetI ASST 7 cut(s) 79, 102, 226, 249, 358, 373, 396
SfaNI GCATC 1 cut(s) 49
SinI GGWCC 3 cut(s) 74, 221, 368
TfiI GAWTC 4 cut(s) 7, 154, 301, 448
TscAI CASTG 3 cut(s) 76, 223, 370
TspDTI ATGAA 4 cut(s) 7, 154, 301, 448
TspRI CASTG 3 cut(s) 76, 223, 370
VpaK11BI GGWCC 3 cut(s) 74, 221, 368
XapI RAATTY 5 cut(s) 14, 161, 212, 308, 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.