Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030474

Physical Location & Seq

Genomic Coordinates Reverse (-)

24787997 .. 24788164

Gene Structure 168 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18564

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGAAAGCTTACCTGGAAGCATTAGCAGAGGCACAAGGAAAGAGAGATTGGGGAAGGACTGGACCCCATGATTCCGGTCGGTACAATCAGTTTCCTGATGACACCGGATTTTTCAAAAGAGATGGAACCTGGAATACCGAGTATGGACAGTTCTTCCTCGAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

55

Amino Acids

6.49

Weight (kDa)

5.12

Isoelectric Point (pI)

5.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_14	PF01373	2 - 55	9.7e-14	Glycosyl hydrolase family 14

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0030474)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0207451
rosa_multiflora	Rmu_sc0004084.1_g000056

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	115
AjnI	CCWGG	2 cut(s)	12, 128
AjuI	GAANNNNNNNTTGG	2 cut(s)	31, 63
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	62
AvaII	GGWCC	1 cut(s)	62
BccI	CCATC	1 cut(s)	116
BciT130I	CCWGG	2 cut(s)	14, 130
Bme1390I	CCNGG	2 cut(s)	14, 130
Bme18I	GGWCC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	62
BmiI	GGNNCC	2 cut(s)	64, 127
BmrFI	CCNGG	2 cut(s)	14, 130
BsaWI	WCCGGW	2 cut(s)	74, 104
Bse1I	ACTGG	1 cut(s)	64
BseBI	CCWGG	2 cut(s)	14, 130
BseNI	ACTGG	1 cut(s)	64
Bsh1285I	CGRYCG	1 cut(s)	79
BsiEI	CGRYCG	1 cut(s)	79
BsiSI	CCGG	2 cut(s)	75, 105
BspLI	GGNNCC	2 cut(s)	64, 127
BsrI	ACTGG	1 cut(s)	64
Bst2UI	CCWGG	2 cut(s)	14, 130
Bst4CI	ACNGT	1 cut(s)	150
BstMCI	CGRYCG	1 cut(s)	79
BstNI	CCWGG	2 cut(s)	14, 130
BstSCI	CCNGG	2 cut(s)	12, 128
Cfr13I	GGNCC	1 cut(s)	62
Csp6I	GTAC	1 cut(s)	82
CviAII	CATG	1 cut(s)	68
CviJI	RGCY	1 cut(s)	8
CviKI_1	RGCY	1 cut(s)	8
CviQI	GTAC	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	62
EcoRII	CCWGG	2 cut(s)	12, 128
FaeI	CATG	1 cut(s)	71
FaiI	YATR	2 cut(s)	69, 144
FatI	CATG	1 cut(s)	67
HapII	CCGG	2 cut(s)	75, 105
Hin1II	CATG	1 cut(s)	71
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	1 cut(s)	71
HpaII	CCGG	2 cut(s)	75, 105
Hpy188III	TCNNGA	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	48
HpyCH4III	ACNGT	1 cut(s)	150
Hsp92II	CATG	1 cut(s)	71
LpnPI	CCDG	7 cut(s)	26, 45, 88, 108, 115, 118, 142
MboII	GAAGA	1 cut(s)	145
MnlI	CCTC	2 cut(s)	22, 167
MspI	CCGG	2 cut(s)	75, 105
MspR9I	CCNGG	2 cut(s)	14, 130
MvaI	CCWGG	2 cut(s)	14, 130
NlaIII	CATG	1 cut(s)	71
NlaIV	GGNNCC	2 cut(s)	64, 127
PfeI	GAWTC	1 cut(s)	71
Psp6I	CCWGG	2 cut(s)	12, 128
PspGI	CCWGG	2 cut(s)	12, 128
PspN4I	GGNNCC	2 cut(s)	64, 127
PspPI	GGNCC	1 cut(s)	62
PsrI	GAACNNNNNNTAC	4 cut(s)	118, 134, 150, 166
RsaI	GTAC	1 cut(s)	83
RsaNI	GTAC	1 cut(s)	82
Sau96I	GGNCC	1 cut(s)	62
ScrFI	CCNGG	2 cut(s)	14, 130
SetI	ASST	3 cut(s)	10, 15, 131
SinI	GGWCC	1 cut(s)	62
StyD4I	CCNGG	2 cut(s)	12, 128
TaaI	ACNGT	1 cut(s)	150
TaqI	TCGA	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	71
TspDTI	ATGAA	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.