Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004084.1

Orthogroup ID

OG0030474

Physical Location & Seq

Genomic Coordinates Forward (+)

287628 .. 287942

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004084.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgaaagccctggaagcatcagcagaggcacaaggaaagagagattggggaaggactggaccccatgattccggccagtacaatcagtttcctgaagacaccgaatttttcaaaagagatggaacctggaatactgagtatggacagttcttcctcgaatggtgctcagagaagctattaaggcacggagatagactcctggcagctgaaaaagtagtgttccaaggaactggtgctaaactatctggaaaggtagctgggatttgttggcactacagaataagatcccatgctgctgaattaactgctggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004553 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009987 GO:0010035 GO:0016052 GO:0016160 GO:0016161 GO:0016787 GO:0016798 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_14

Protein Analysis

104

Amino Acids

11.75

Weight (kDa)

6.9

Isoelectric Point (pI)

22.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030474)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0207451
rosa_multiflora	Rmu_sc0004084.1_g000056

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	279
AcoI	YGGCCR	1 cut(s)	73
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	112
AjnI	CCWGG	3 cut(s)	9, 125, 198
AjuI	GAANNNNNNNTTGG	2 cut(s)	28, 60
AluBI	AGCT	3 cut(s)	175, 206, 257
AluI	AGCT	3 cut(s)	175, 206, 257
Alw21I	GWGCWC	1 cut(s)	167
AlwI	GGATC	1 cut(s)	279
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	2 cut(s)	203, 293
ApoI	RAATTY	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	2 cut(s)	215, 280
BccI	CCATC	1 cut(s)	113
BciT130I	CCWGG	3 cut(s)	11, 127, 200
BfaI	CTAG	1 cut(s)	313
BfmI	CTRYAG	1 cut(s)	274
BisI	GCNGC	2 cut(s)	204, 294
BlsI	GCNGC	2 cut(s)	205, 295
Bme1390I	CCNGG	3 cut(s)	11, 127, 200
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	59
BmiI	GGNNCC	2 cut(s)	61, 124
BmrFI	CCNGG	3 cut(s)	11, 127, 200
BmsI	GCATC	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	102
BplI	GAGNNNNNCTC	2 cut(s)	180, 212
BsaJI	CCNNGG	2 cut(s)	9, 223
Bse1I	ACTGG	3 cut(s)	61, 76, 235
BseBI	CCWGG	3 cut(s)	11, 127, 200
BseDI	CCNNGG	2 cut(s)	9, 223
BseMII	CTCAG	2 cut(s)	126, 180
BseNI	ACTGG	3 cut(s)	61, 76, 235
BseXI	GCAGC	2 cut(s)	215, 280
BseYI	CCCAGC	1 cut(s)	257
BshFI	GGCC	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	167
BsiSI	CCGG	1 cut(s)	72
BsnI	GGCC	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	284
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	2 cut(s)	127, 179
BspLI	GGNNCC	2 cut(s)	61, 124
BspPI	GGATC	1 cut(s)	279
BsrI	ACTGG	3 cut(s)	61, 76, 235
BssECI	CCNNGG	2 cut(s)	9, 223
BssMI	GATC	1 cut(s)	284
BssT1I	CCWWGG	1 cut(s)	223
Bst2UI	CCWGG	3 cut(s)	11, 127, 200
Bst4CI	ACNGT	1 cut(s)	147
BstC8I	GCNNGC	1 cut(s)	310
BstDEI	CTNAG	2 cut(s)	135, 166
BstKTI	GATC	1 cut(s)	287
BstMBI	GATC	1 cut(s)	284
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 181
BstNI	CCWGG	3 cut(s)	11, 127, 200
BstSCI	CCNGG	3 cut(s)	9, 125, 198
BstSFI	CTRYAG	1 cut(s)	274
BstV1I	GCAGC	2 cut(s)	215, 280
BstV2I	GAAGAC	1 cut(s)	102
BstX2I	RGATCY	1 cut(s)	284
BstXI	CCANNNNNNTGG	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	284
BsuRI	GGCC	1 cut(s)	75
Cac8I	GCNNGC	1 cut(s)	310
Cfr13I	GGNCC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	2 cut(s)	65, 290
CviJI	RGCY	6 cut(s)	8, 75, 175, 206, 257, 312
CviKI_1	RGCY	6 cut(s)	8, 75, 175, 206, 257, 312
CviQI	GTAC	1 cut(s)	79
DdeI	CTNAG	2 cut(s)	135, 166
DpnI	GATC	1 cut(s)	286
DpnII	GATC	1 cut(s)	284
EaeI	YGGCCR	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	59
Eco57I	CTGAAG	1 cut(s)	114
EcoRII	CCWGG	3 cut(s)	9, 125, 198
EcoT14I	CCWWGG	1 cut(s)	223
ErhI	CCWWGG	1 cut(s)	223
FaeI	CATG	2 cut(s)	68, 293
FaiI	YATR	3 cut(s)	66, 141, 291
FatI	CATG	2 cut(s)	64, 289
Fnu4HI	GCNGC	2 cut(s)	204, 294
Fsp4HI	GCNGC	2 cut(s)	204, 294
FspBI	CTAG	1 cut(s)	313
GluI	GCNGC	2 cut(s)	204, 294
GsaI	CCCAGC	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	1 cut(s)	72
Hin1II	CATG	2 cut(s)	68, 293
HinfI	GANTC	2 cut(s)	68, 195
HpaII	CCGG	1 cut(s)	72
Hpy188I	TCNGA	1 cut(s)	169
Hpy188III	TCNNGA	2 cut(s)	92, 246
HpyAV	CCTTC	1 cut(s)	45
HpyCH4III	ACNGT	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 181
HpyF3I	CTNAG	2 cut(s)	135, 166
Hsp92II	CATG	2 cut(s)	68, 293
Kzo9I	GATC	1 cut(s)	284
Lsp1109I	GCAGC	2 cut(s)	215, 280
LweI	GCATC	1 cut(s)	26
MaeI	CTAG	1 cut(s)	313
MalI	GATC	1 cut(s)	286
MboI	GATC	1 cut(s)	284
MboII	GAAGA	2 cut(s)	107, 142
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	2 cut(s)	104, 299
MlyI	GAGTC	1 cut(s)	189
MnlI	CCTC	2 cut(s)	19, 164
MseI	TTAA	2 cut(s)	179, 302
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	1 cut(s)	72
MspR9I	CCNGG	3 cut(s)	11, 127, 200
MvaI	CCWGG	3 cut(s)	11, 127, 200
MwoI	GCNNNNNNNGC	2 cut(s)	14, 181
NdeII	GATC	1 cut(s)	284
NlaIII	CATG	2 cut(s)	68, 293
NlaIV	GGNNCC	2 cut(s)	61, 124
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	205, 295
PleI	GAGTC	1 cut(s)	189
PpsI	GAGTC	1 cut(s)	189
Psp6I	CCWGG	3 cut(s)	9, 125, 198
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	3 cut(s)	9, 125, 198
PspN4I	GGNNCC	2 cut(s)	61, 124
PspPI	GGNCC	1 cut(s)	59
PsrI	GAACNNNNNNTAC	4 cut(s)	115, 131, 147, 163
PsuI	RGATCY	1 cut(s)	284
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SaqAI	TTAA	2 cut(s)	179, 302
SatI	GCNGC	2 cut(s)	204, 294
Sau3AI	GATC	1 cut(s)	284
Sau96I	GGNCC	1 cut(s)	59
SchI	GAGTC	1 cut(s)	189
ScrFI	CCNGG	3 cut(s)	11, 127, 200
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	5 cut(s)	128, 177, 208, 255, 259
SfaNI	GCATC	1 cut(s)	26
SfcI	CTRYAG	1 cut(s)	274
SinI	GGWCC	1 cut(s)	59
Sse9I	AATT	2 cut(s)	104, 299
SspMI	CTAG	1 cut(s)	313
StyD4I	CCNGG	3 cut(s)	9, 125, 198
StyI	CCWWGG	1 cut(s)	223
TaaI	ACNGT	1 cut(s)	147
TaqI	TCGA	1 cut(s)	156
TasI	AATT	2 cut(s)	104, 299
TatI	WGTACW	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	68
Tru1I	TTAA	2 cut(s)	179, 302
Tru9I	TTAA	2 cut(s)	179, 302
TseI	GCWGC	2 cut(s)	203, 293
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	59
XapI	RAATTY	1 cut(s)	104
XspI	CTAG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.