Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030426

Physical Location & Seq

Genomic Coordinates Forward (+)

26352203 .. 26352544

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18703

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCAATTATGGCCTTTCAAGGTTCGTGGAGTCGGGGACAAACCCATGATTATGATCAATTATAAGAATGAAAAAAAAAAAAAAAAACAGTTTGCCGCTGAGGAGATATCCGCAATAGTTTCCCACATACAACATGAATCATTCGTTGATGTTAATGAGGACGGTACAGAAGCTGCTGCTGTCACAGTTGCTCATCAAAGGGGTTTCACTACTTTCGCTTGGAGTCAGGAGAAGAGGGTAGAAGTTGTGGTAGATCATCCCTTCCTTTTTCTTATCAGAGAAGAAACAACTGGATTAGTGCTGTTCATTGGACATATCCTCAATCCGATTGCAGACTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004867 GO:0004869 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010466 GO:0010605 GO:0010951 GO:0019222 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0033554 GO:0034641 GO:0043086 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0045861 GO:0046483 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0071704 GO:0080090 GO:0090304 GO:0098772 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko05146 map05146

Pfam Domains

Protein Families

Serpin

Protein Analysis

113

Amino Acids

12.85

Weight (kDa)

6.19

Isoelectric Point (pI)

33.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Serpin	PF00079	37 - 109	1.7e-19	Serpin (serine protease inhibitor)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030426)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0208971
rosa_samantha	Rh6BG022700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	63
AciI	CCGC	2 cut(s)	96, 111
AfaI	GTAC	1 cut(s)	166
AgsI	TTSAA	1 cut(s)	19
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
AlwNI	CAGNNNCTG	1 cut(s)	173
AoxI	GGCC	1 cut(s)	11
ApeKI	GCWGC	2 cut(s)	173, 176
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	160, 163
BclI	TGATCA	1 cut(s)	54
BisI	GCNGC	3 cut(s)	96, 174, 177
BlsI	GCNGC	3 cut(s)	97, 175, 178
Bpu10I	CCTNAGC	1 cut(s)	99
BsaBI	GATNNNNATC	1 cut(s)	53
Bse1I	ACTGG	1 cut(s)	295
Bse8I	GATNNNNATC	1 cut(s)	53
BseGI	GGATG	1 cut(s)	256
BseJI	GATNNNNATC	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	116
BseXI	GCAGC	2 cut(s)	160, 163
BshFI	GGCC	1 cut(s)	13
BslFI	GGGAC	1 cut(s)	50
BsmFI	GGGAC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	13
Bsp143I	GATC	2 cut(s)	54, 253
BspACI	CCGC	2 cut(s)	96, 111
BspANI	GGCC	1 cut(s)	13
BspCNI	CTCAG	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	295
BssMI	GATC	2 cut(s)	54, 253
Bst4CI	ACNGT	3 cut(s)	90, 164, 187
Bst6I	CTCTTC	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	2 cut(s)	57, 256
BstMBI	GATC	2 cut(s)	54, 253
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstV1I	GCAGC	2 cut(s)	160, 163
BsuRI	GGCC	1 cut(s)	13
BtsCI	GGATG	1 cut(s)	256
CaiI	CAGNNNCTG	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	165
CspCI	CAANNNNNGTGG	2 cut(s)	7, 42
CviAII	CATG	2 cut(s)	46, 134
CviJI	RGCY	2 cut(s)	13, 173
CviKI_1	RGCY	2 cut(s)	13, 173
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	2 cut(s)	56, 255
DpnII	GATC	2 cut(s)	54, 253
Eam1104I	CTCTTC	1 cut(s)	227
EarI	CTCTTC	1 cut(s)	227
Eco32I	GATATC	1 cut(s)	108
EcoRV	GATATC	1 cut(s)	108
FaeI	CATG	2 cut(s)	49, 137
FaiI	YATR	8 cut(s)	10, 47, 53, 63, 128, 135, 315, 340
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	2 cut(s)	45, 133
FbaI	TGATCA	1 cut(s)	54
Fnu4HI	GCNGC	3 cut(s)	96, 174, 177
FokI	GGATG	1 cut(s)	243
Fsp4HI	GCNGC	3 cut(s)	96, 174, 177
GluI	GCNGC	3 cut(s)	96, 174, 177
HaeIII	GGCC	1 cut(s)	13
Hin1II	CATG	2 cut(s)	49, 137
HinfI	GANTC	4 cut(s)	30, 137, 223, 335
Hpy188I	TCNGA	2 cut(s)	278, 327
Hpy188III	TCNNGA	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	3 cut(s)	90, 164, 187
HpyCH4V	TGCA	2 cut(s)	4, 332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	49, 137
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	2 cut(s)	54, 253
LpnPI	CCDG	2 cut(s)	212, 276
Lsp1109I	GCAGC	2 cut(s)	160, 163
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	56, 255
MboI	GATC	2 cut(s)	54, 253
MboII	GAAGA	2 cut(s)	244, 293
MluCI	AATT	2 cut(s)	5, 58
MlyI	GAGTC	3 cut(s)	39, 232, 329
MnlI	CCTC	4 cut(s)	94, 151, 228, 329
MseI	TTAA	1 cut(s)	153
MslI	CAYNNNNRTG	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	98
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	2 cut(s)	54, 253
NlaIII	CATG	2 cut(s)	49, 137
NmuCI	GTSAC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	137
PkrI	GCNGC	3 cut(s)	97, 175, 178
PleI	GAGTC	3 cut(s)	38, 231, 329
PpsI	GAGTC	3 cut(s)	38, 231, 329
PsiI	TTATAA	1 cut(s)	63
PstNI	CAGNNNCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	1 cut(s)	153
SatI	GCNGC	3 cut(s)	96, 174, 177
Sau3AI	GATC	2 cut(s)	54, 253
SchI	GAGTC	3 cut(s)	39, 232, 329
SetI	ASST	2 cut(s)	24, 175
SgeI	CNNG	8 cut(s)	31, 38, 46, 58, 146, 231, 239, 303
SmiMI	CAYNNNNRTG	1 cut(s)	50
Sse9I	AATT	2 cut(s)	5, 58
SsiI	CCGC	2 cut(s)	96, 111
TaaI	ACNGT	3 cut(s)	90, 164, 187
TasI	AATT	2 cut(s)	5, 58
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	2 cut(s)	173, 176
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	3 cut(s)	84, 150, 295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.