RchiOBHm_Chr7g0209651

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0030519
Physical Location & Seq
Reverse (-)
27110395 .. 27111209
815 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18761

Sequence Viewer

Length: 240 bp
ATGGCTCCCTGCTTTCGAAGTCCCTTTCATGATTTCGCTCAAAAGGGTATTTTGGAGTCTGTTGGAGAGAGCCAGAAGAAGCCATTTGTGATTCTATTATCATACTTGAACCAACCTTCATTTATGGAGTTGCTGAGTCAAGCTGAAGAAGAATTTGGATATGATCATCCTGTGGGCGGTATCGCAATTCCTTGCAGTGAGGACACCTTCCTTGATCTCACTTGCAGCTTAAGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

79

Amino Acids

8.81

Weight (kDa)

4.4

Isoelectric Point (pI)

56.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 21 - 77 1.7e-14 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0030519)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0209651
rosa_rugosa Rorug07G0115000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 177
AcsI RAATTY 1 cut(s) 152
AcuI CTGAAG 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 176
AflII CTTAAG 1 cut(s) 229
AgsI TTSAA 1 cut(s) 109
AjuI GAANNNNNNNTTGG 2 cut(s) 138, 170
AluBI AGCT 2 cut(s) 143, 228
AluI AGCT 2 cut(s) 143, 228
ApeKI GCWGC 1 cut(s) 225
ApoI RAATTY 1 cut(s) 152
AsuII TTCGAA 1 cut(s) 16
BclI TGATCA 1 cut(s) 163
BfrI CTTAAG 1 cut(s) 229
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 6
Bpu14I TTCGAA 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 176
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 125
BslFI GGGAC 1 cut(s) 6
BslI CCNNNNNNNGG 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 6
Bsp119I TTCGAA 1 cut(s) 16
Bsp143I GATC 2 cut(s) 163, 214
BspACI CCGC 1 cut(s) 177
BspCNI CTCAG 1 cut(s) 126
BspHI TCATGA 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 6
BspT104I TTCGAA 1 cut(s) 16
BspTI CTTAAG 1 cut(s) 229
BssMI GATC 2 cut(s) 163, 214
BstAFI CTTAAG 1 cut(s) 229
BstBI TTCGAA 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 134
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 2 cut(s) 166, 217
BstMBI GATC 2 cut(s) 163, 214
BtsCI GGATG 1 cut(s) 166
BtsI GCAGTG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 202
CciI TCATGA 1 cut(s) 28
CviAII CATG 1 cut(s) 29
CviJI RGCY 5 cut(s) 5, 72, 82, 143, 228
CviKI_1 RGCY 5 cut(s) 5, 72, 82, 143, 228
DdeI CTNAG 1 cut(s) 134
DpnI GATC 2 cut(s) 165, 216
DpnII GATC 2 cut(s) 163, 214
Eco57I CTGAAG 1 cut(s) 165
FaeI CATG 1 cut(s) 32
FaiI YATR 4 cut(s) 30, 103, 125, 162
FaqI GGGAC 1 cut(s) 6
FatI CATG 1 cut(s) 28
FbaI TGATCA 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 226
GluI GCNGC 1 cut(s) 226
Hin1II CATG 1 cut(s) 32
HinfI GANTC 3 cut(s) 56, 91, 136
Hpy188III TCNNGA 1 cut(s) 29
HpyAV CCTTC 2 cut(s) 126, 217
HpyCH4V TGCA 2 cut(s) 195, 225
HpyF3I CTNAG 1 cut(s) 134
Hsp92II CATG 1 cut(s) 32
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 2 cut(s) 163, 214
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 3 cut(s) 22, 86, 183
MalI GATC 2 cut(s) 165, 216
MboI GATC 2 cut(s) 163, 214
MboII GAAGA 3 cut(s) 88, 158, 161
MluCI AATT 2 cut(s) 152, 186
MlyI GAGTC 2 cut(s) 65, 145
MmeI TCCRAC 1 cut(s) 43
MnlI CCTC 1 cut(s) 193
MseI TTAA 1 cut(s) 230
MspCI CTTAAG 1 cut(s) 229
NdeII GATC 2 cut(s) 163, 214
NlaIII CATG 1 cut(s) 32
NlaIV GGNNCC 1 cut(s) 6
NspV TTCGAA 1 cut(s) 16
PagI TCATGA 1 cut(s) 28
PfeI GAWTC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 227
PleI GAGTC 2 cut(s) 64, 144
PpsI GAGTC 2 cut(s) 64, 144
PspN4I GGNNCC 1 cut(s) 6
SaqAI TTAA 1 cut(s) 230
SatI GCNGC 1 cut(s) 226
Sau3AI GATC 2 cut(s) 163, 214
SchI GAGTC 2 cut(s) 65, 145
SetI ASST 4 cut(s) 118, 145, 209, 230
SfuI TTCGAA 1 cut(s) 16
SgeI CNNG 9 cut(s) 21, 41, 85, 118, 152, 182, 204, 224, 234
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
Sse9I AATT 2 cut(s) 152, 186
SsiI CCGC 1 cut(s) 177
TaqI TCGA 1 cut(s) 16
TasI AATT 2 cut(s) 152, 186
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 1 cut(s) 230
Tru9I TTAA 1 cut(s) 230
TscAI CASTG 1 cut(s) 202
TseI GCWGC 1 cut(s) 225
TspDTI ATGAA 2 cut(s) 17, 108
TspRI CASTG 1 cut(s) 202
Vha464I CTTAAG 1 cut(s) 229
XapI RAATTY 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.