Rorug07G0115000

Auxin-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0030519
Physical Location & Seq
Reverse (-)
8967723 .. 8968103
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0115000.1

Sequence Viewer

Length: 381 bp
ATGGCTAGCCTTGTCCGGAGACTGACCAGAAACTCAACCTCTCTAAGAACCCATCTTTTCCCTATACCTAAACCCTATCCCATTACCCATCACAATCATCTGGGCCCTCCCAAATCTGACACCCAGCTTCCCCATCTGGGTCCTATAAGCGTCGACAAGGTCGAATTGTCGTTGCCGGTTTTCCCCAGTTTTCCATTCGGGTATTGCTTGAATCCGATTTCCCAAATTGGGTCGGAGCGGTTGGGGCTGTGCGACGCCGATGGGGTCGGGTCTGATGACGCGGGGACGATTTGGGCTGACAGCGTGAAGAAGAAGAGGAAGAGGAAGATGAACAAGCATAAGTTGAGGAAGCTCAGGAAGAGTCTTCGTCGCAAGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Auxin_inducible

Protein Analysis

126

Amino Acids

14.2

Weight (kDa)

10.55

Isoelectric Point (pI)

51.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COX24_C PF08213 99 - 123 2e-07 Mitochondrial mRNA-processing protein COX24, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030519)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0209651
rosa_rugosa Rorug07G0115000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 238
AccI GTMKAC 1 cut(s) 153
AccII CGCG 1 cut(s) 281
AccIII TCCGGA 1 cut(s) 15
AciI CCGC 2 cut(s) 238, 281
AcyI GRCGYC 1 cut(s) 255
AfiI CCNNNNNNNGG 2 cut(s) 137, 228
AgsI TTSAA 1 cut(s) 211
AjiI CACGTC 1 cut(s) 378
AluBI AGCT 2 cut(s) 127, 352
AluI AGCT 2 cut(s) 127, 352
Alw26I GTCTC 1 cut(s) 13
Aor13HI TCCGGA 1 cut(s) 15
AoxI GGCC 1 cut(s) 103
ApaI GGGCCC 1 cut(s) 107
AspS9I GGNCC 3 cut(s) 103, 104, 140
AsuNHI GCTAGC 1 cut(s) 5
AvaII GGWCC 1 cut(s) 140
BaeGI GKGCMC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 107
BbsI GAAGAC 1 cut(s) 356
BccI CCATC 4 cut(s) 60, 96, 141, 254
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 1 cut(s) 6
Bme18I GGWCC 1 cut(s) 140
BmgBI CACGTC 1 cut(s) 378
BmgT120I GGNCC 3 cut(s) 103, 104, 140
BmiI GGNNCC 2 cut(s) 105, 141
BmrI ACTGGG 1 cut(s) 180
BmtI GCTAGC 1 cut(s) 9
BmuI ACTGGG 1 cut(s) 180
BpiI GAAGAC 1 cut(s) 356
Bpu10I CCTNAGC 1 cut(s) 353
BsaHI GRCGYC 1 cut(s) 255
BsaWI WCCGGW 1 cut(s) 15
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 228
Bse118I RCCGGY 1 cut(s) 175
Bse1I ACTGG 1 cut(s) 186
BseAI TCCGGA 1 cut(s) 15
BseLI CCNNNNNNNGG 2 cut(s) 137, 228
BseMII CTCAG 1 cut(s) 367
BseNI ACTGG 1 cut(s) 186
BseSI GKGCMC 1 cut(s) 107
BseYI CCCAGC 1 cut(s) 123
Bsh1236I CGCG 1 cut(s) 281
BshFI GGCC 1 cut(s) 105
BsiSI CCGG 2 cut(s) 16, 176
BslFI GGGAC 1 cut(s) 298
BslI CCNNNNNNNGG 2 cut(s) 137, 228
BsmAI GTCTC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 298
BsnI GGCC 1 cut(s) 105
Bsp120I GGGCCC 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 107
Bsp13I TCCGGA 1 cut(s) 15
BspACI CCGC 2 cut(s) 238, 281
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 366
BspEI TCCGGA 1 cut(s) 15
BspFNI CGCG 1 cut(s) 281
BspLI GGNNCC 2 cut(s) 105, 141
BspOI GCTAGC 1 cut(s) 9
BsrBI CCGCTC 1 cut(s) 238
BsrFI RCCGGY 1 cut(s) 175
BsrI ACTGG 1 cut(s) 186
BssAI RCCGGY 1 cut(s) 175
BssNI GRCGYC 1 cut(s) 255
Bst6I CTCTTC 3 cut(s) 308, 314, 353
BstACI GRCGYC 1 cut(s) 255
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 44, 353
BstFNI CGCG 1 cut(s) 281
BstMAI GTCTC 1 cut(s) 13
BstMWI GCNNNNNNNGC 1 cut(s) 244
BstSLI GKGCMC 1 cut(s) 107
BstUI CGCG 1 cut(s) 281
BstV2I GAAGAC 1 cut(s) 356
BsuRI GGCC 1 cut(s) 105
BtrI CACGTC 1 cut(s) 378
Cac8I GCNNGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 175
Cfr13I GGNCC 3 cut(s) 103, 104, 140
CseI GACGC 3 cut(s) 139, 263, 287
CviJI RGCY 7 cut(s) 5, 9, 105, 127, 247, 296, 352
CviKI_1 RGCY 7 cut(s) 5, 9, 105, 127, 247, 296, 352
DdeI CTNAG 2 cut(s) 44, 353
Eam1104I CTCTTC 3 cut(s) 308, 314, 353
EarI CTCTTC 3 cut(s) 308, 314, 353
Eco24I GRGCYC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 140
EcoO109I RGGNCCY 2 cut(s) 104, 140
EcoT38I GRGCYC 1 cut(s) 107
FaiI YATR 3 cut(s) 65, 146, 339
FaqI GGGAC 1 cut(s) 298
FauI CCCGC 1 cut(s) 274
FblI GTMKAC 1 cut(s) 153
FriOI GRGCYC 1 cut(s) 107
FspBI CTAG 1 cut(s) 6
GsaI CCCAGC 1 cut(s) 127
HaeIII GGCC 1 cut(s) 105
HapII CCGG 2 cut(s) 16, 176
HgaI GACGC 3 cut(s) 139, 263, 287
Hin1I GRCGYC 1 cut(s) 255
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HinfI GANTC 2 cut(s) 211, 361
HpaII CCGG 2 cut(s) 16, 176
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 4 cut(s) 118, 216, 235, 274
Hpy188III TCNNGA 2 cut(s) 16, 355
Hpy8I GTNNAC 1 cut(s) 154
Hpy99I CGWCG 3 cut(s) 155, 257, 372
HpyCH4IV ACGT 1 cut(s) 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 244
HpyF3I CTNAG 2 cut(s) 44, 353
HpySE526I ACGT 1 cut(s) 377
Hsp92I GRCGYC 1 cut(s) 255
Kpn2I TCCGGA 1 cut(s) 15
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 8 cut(s) 29, 40, 86, 122, 137, 189, 199, 340
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 377
MbiI CCGCTC 1 cut(s) 238
MboII GAAGA 7 cut(s) 319, 322, 325, 331, 337, 356, 370
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 2 cut(s) 164, 225
MlyI GAGTC 1 cut(s) 370
MmeI TCCRAC 1 cut(s) 213
MnlI CCTC 5 cut(s) 49, 117, 309, 315, 339
MroI TCCGGA 1 cut(s) 15
MspI CCGG 2 cut(s) 16, 176
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 1 cut(s) 244
NheI GCTAGC 1 cut(s) 5
NlaIV GGNNCC 2 cut(s) 105, 141
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PfeI GAWTC 1 cut(s) 211
PflFI GACNNNGTC 1 cut(s) 158
PleI GAGTC 1 cut(s) 369
PpsI GAGTC 1 cut(s) 369
PpuMI RGGWCCY 1 cut(s) 140
Psp5II RGGWCCY 1 cut(s) 140
PspFI CCCAGC 1 cut(s) 123
PspN4I GGNNCC 2 cut(s) 105, 141
PspOMI GGGCCC 1 cut(s) 103
PspPI GGNCC 3 cut(s) 103, 104, 140
PspPPI RGGWCCY 1 cut(s) 140
PsyI GACNNNGTC 1 cut(s) 158
SalI GTCGAC 1 cut(s) 152
Sau96I GGNCC 3 cut(s) 103, 104, 140
SchI GAGTC 1 cut(s) 370
SduI GDGCHC 1 cut(s) 107
SetI ASST 6 cut(s) 41, 70, 129, 162, 354, 380
SinI GGWCC 1 cut(s) 140
Sse9I AATT 2 cut(s) 164, 225
SsiI CCGC 2 cut(s) 238, 281
SspMI CTAG 1 cut(s) 6
TaiI ACGT 1 cut(s) 380
TaqI TCGA 2 cut(s) 153, 162
TasI AATT 2 cut(s) 164, 225
TfiI GAWTC 1 cut(s) 211
TspDTI ATGAA 1 cut(s) 344
Tth111I GACNNNGTC 1 cut(s) 158
VpaK11BI GGWCC 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 153
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.