RchiOBHm_Chr7g0211561

50S ribosomal protein L3-2

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
28676812 .. 28676991
180 bp
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UTR
Exon/CDS
Intron
PRQ18927

Sequence Viewer

Length: 180 bp
ATGTCATACTCTCATTTCTTCAGATGCTTCAACTCCGAGGCCTTTGTAGGTGAGATTGCTGTAGATTGGAGACGGATTATTGAGGCTAACTTTAGAGTCATAACCCGGAAGTCGAAGCAAACCAGATCCAAAGTTCTTTTTTTTTTTTTTTTTTTGAAATCTCAGATCCAAACTCTTTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

59

Amino Acids

7.17

Weight (kDa)

10.52

Isoelectric Point (pI)

43.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030539)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0211561
rosa_laevigata RLG00000002930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 120, 160
AcuI CTGAAG 1 cut(s) 4
AgsI TTSAA 2 cut(s) 31, 157
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 2 cut(s) 120, 160
AoxI GGCC 1 cut(s) 39
AsuC2I CCSGG 1 cut(s) 106
AsuHPI GGTGA 1 cut(s) 62
BcnI CCSGG 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 64
BfmI CTRYAG 1 cut(s) 60
Bme1390I CCNGG 1 cut(s) 106
BmrFI CCNGG 1 cut(s) 106
BmsI GCATC 1 cut(s) 14
BpuMI CCSGG 1 cut(s) 106
BsaJI CCNNGG 1 cut(s) 36
BseDI CCNNGG 1 cut(s) 36
BseMII CTCAG 1 cut(s) 176
BshFI GGCC 1 cut(s) 41
BsiSI CCGG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 64
BsmBI CGTCTC 1 cut(s) 64
BsnI GGCC 1 cut(s) 41
Bsp143I GATC 2 cut(s) 125, 165
BspANI GGCC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 175
BspPI GGATC 2 cut(s) 120, 160
BssECI CCNNGG 1 cut(s) 36
BssMI GATC 2 cut(s) 125, 165
BstDEI CTNAG 1 cut(s) 162
BstKTI GATC 2 cut(s) 128, 168
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 2 cut(s) 125, 165
BstSCI CCNGG 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 60
BstX2I RGATCY 2 cut(s) 125, 165
BstYI RGATCY 2 cut(s) 125, 165
BsuRI GGCC 1 cut(s) 41
CviJI RGCY 2 cut(s) 41, 86
CviKI_1 RGCY 2 cut(s) 41, 86
DdeI CTNAG 1 cut(s) 162
DpnI GATC 2 cut(s) 127, 167
DpnII GATC 2 cut(s) 125, 165
Eco147I AGGCCT 1 cut(s) 41
Eco57I CTGAAG 1 cut(s) 4
Esp3I CGTCTC 1 cut(s) 64
FaiI YATR 2 cut(s) 7, 101
HaeIII GGCC 1 cut(s) 41
HapII CCGG 1 cut(s) 106
HinfI GANTC 1 cut(s) 96
HpaII CCGG 1 cut(s) 106
HphI GGTGA 1 cut(s) 62
Hpy188I TCNGA 3 cut(s) 23, 37, 165
HpyF3I CTNAG 1 cut(s) 162
Kzo9I GATC 2 cut(s) 125, 165
LpnPI CCDG 2 cut(s) 119, 136
LweI GCATC 1 cut(s) 14
MalI GATC 2 cut(s) 127, 167
MboI GATC 2 cut(s) 125, 165
MboII GAAGA 1 cut(s) 10
MflI RGATCY 2 cut(s) 125, 165
MlyI GAGTC 1 cut(s) 105
MnlI CCTC 2 cut(s) 31, 76
MseI TTAA 1 cut(s) 178
MspI CCGG 1 cut(s) 106
MspR9I CCNGG 1 cut(s) 106
NciI CCSGG 1 cut(s) 106
NdeII GATC 2 cut(s) 125, 165
PceI AGGCCT 1 cut(s) 41
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PsuI RGATCY 2 cut(s) 125, 165
SaqAI TTAA 1 cut(s) 178
Sau3AI GATC 2 cut(s) 125, 165
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 1 cut(s) 106
SetI ASST 1 cut(s) 52
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 60
SgeI CNNG 4 cut(s) 49, 117, 118, 135
SseBI AGGCCT 1 cut(s) 41
StuI AGGCCT 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 104
TaqI TCGA 1 cut(s) 113
Tru1I TTAA 1 cut(s) 178
Tru9I TTAA 1 cut(s) 178
TspGWI ACGGA 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.