Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0025115

Physical Location & Seq

Genomic Coordinates Reverse (-)

30972744 .. 30973064

Gene Structure 321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19139

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGACTCGCACGCAAGCGTGCAGGCAGATGGCGAAGTCGGCGACGCACGTAGCAATTGTGCGCCTCTTCTCCACGGCAGCCAGAGCTGCCACCAATAATGCGCCCGCGGCCAAACAATTGTCCTTCATAATCATTCCTCTAAAGGATGCGGCCGCGGGCGCATGGTGGAACAACGGCAGCATCATTTACCCCGTTCAGAGGGTACGCAGTGGTAGCACCCTGGCTCTCGGCCGTCAGGAGAAGCAGCAAGAGGAGGCTGATCATAGCAACTCCGCCGTTTCGGTTGCCGGACACGGTGGTGGTAATAAGGACGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009916 GO:0009987 GO:0015980 GO:0016491 GO:0016679 GO:0016682 GO:0023052 GO:0031930 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AOX

Protein Analysis

106

Amino Acids

11.25

Weight (kDa)

9.74

Isoelectric Point (pI)

39.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025115)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0213871
rosa_samantha	Rh7AG277300 Rh7CG296300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	107, 155
AciI	CCGC	6 cut(s)	105, 107, 149, 153, 155, 273
AcoI	YGGCCR	3 cut(s)	108, 150, 229
AfaI	GTAC	1 cut(s)	204
AfiI	CCNNNNNNNGG	1 cut(s)	198
AjnI	CCWGG	1 cut(s)	219
AleI	CACNNNNGTG	1 cut(s)	297
AluBI	AGCT	1 cut(s)	86
AluI	AGCT	1 cut(s)	86
AoxI	GGCC	3 cut(s)	108, 150, 229
ApeKI	GCWGC	4 cut(s)	77, 86, 177, 244
AspLEI	GCGC	3 cut(s)	63, 103, 161
BbvI	GCAGC	4 cut(s)	73, 89, 189, 256
BccI	CCATC	1 cut(s)	22
BceAI	ACGGC	4 cut(s)	90, 190, 216, 260
BciT130I	CCWGG	1 cut(s)	221
BclI	TGATCA	1 cut(s)	259
BisI	GCNGC	7 cut(s)	78, 87, 108, 150, 153, 178, 245
BlsI	GCNGC	7 cut(s)	79, 88, 109, 151, 154, 179, 246
Bme1390I	CCNGG	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	2 cut(s)	136, 189
BsaAI	YACGTR	1 cut(s)	49
BsaJI	CCNNGG	4 cut(s)	72, 105, 153, 219
Bsc4I	CCNNNNNNNGG	1 cut(s)	198
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	4 cut(s)	72, 105, 153, 219
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	266
BseX3I	CGGCCG	2 cut(s)	150, 229
BseXI	GCAGC	4 cut(s)	73, 89, 189, 256
BsgI	GTGCAG	1 cut(s)	40
Bsh1236I	CGCG	2 cut(s)	107, 155
Bsh1285I	CGRYCG	2 cut(s)	153, 232
BshFI	GGCC	3 cut(s)	110, 152, 231
BsiEI	CGRYCG	2 cut(s)	153, 232
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	1 cut(s)	198
BsnI	GGCC	3 cut(s)	110, 152, 231
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	6 cut(s)	105, 107, 149, 153, 155, 273
BspANI	GGCC	3 cut(s)	110, 152, 231
BspFNI	CGCG	2 cut(s)	107, 155
BssECI	CCNNGG	4 cut(s)	72, 105, 153, 219
BssMI	GATC	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	1 cut(s)	296
Bst6I	CTCTTC	1 cut(s)	71
BstBAI	YACGTR	1 cut(s)	49
BstC8I	GCNNGC	6 cut(s)	11, 15, 19, 23, 105, 157
BstDSI	CCRYGG	3 cut(s)	72, 105, 153
BstF5I	GGATG	1 cut(s)	151
BstFNI	CGCG	2 cut(s)	107, 155
BstHHI	GCGC	3 cut(s)	63, 103, 161
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstMCI	CGRYCG	2 cut(s)	153, 232
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 83, 86, 107, 158, 213
BstNI	CCWGG	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	219
BstUI	CGCG	2 cut(s)	107, 155
BstV1I	GCAGC	4 cut(s)	73, 89, 189, 256
BstZI	CGGCCG	2 cut(s)	150, 229
BsuRI	GGCC	3 cut(s)	110, 152, 231
BtgI	CCRYGG	3 cut(s)	72, 105, 153
BtsCI	GGATG	1 cut(s)	151
BtsI	GCAGTG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	214
Cac8I	GCNNGC	6 cut(s)	11, 15, 19, 23, 105, 157
CciNI	GCGGCCGC	1 cut(s)	150
CfoI	GCGC	3 cut(s)	63, 103, 161
Cfr42I	CCGCGG	2 cut(s)	108, 156
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	203
CviAII	CATG	1 cut(s)	162
CviJI	RGCY	7 cut(s)	80, 86, 110, 152, 224, 231, 257
CviKI_1	RGCY	7 cut(s)	80, 86, 110, 152, 224, 231, 257
CviQI	GTAC	1 cut(s)	203
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
EaeI	YGGCCR	3 cut(s)	108, 150, 229
EagI	CGGCCG	2 cut(s)	150, 229
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
EciI	GGCGGA	1 cut(s)	262
EclXI	CGGCCG	2 cut(s)	150, 229
Eco52I	CGGCCG	2 cut(s)	150, 229
EcoRII	CCWGG	1 cut(s)	219
FaeI	CATG	1 cut(s)	165
FaiI	YATR	3 cut(s)	128, 163, 264
FatI	CATG	1 cut(s)	161
FauI	CCCGC	2 cut(s)	112, 148
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	7 cut(s)	78, 87, 108, 150, 153, 178, 245
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	7 cut(s)	78, 87, 108, 150, 153, 178, 245
GlaI	GCGC	3 cut(s)	62, 102, 160
GluI	GCNGC	7 cut(s)	78, 87, 108, 150, 153, 178, 245
HaeIII	GGCC	3 cut(s)	110, 152, 231
HapII	CCGG	1 cut(s)	288
HgaI	GACGC	1 cut(s)	52
HhaI	GCGC	3 cut(s)	63, 103, 161
Hin1II	CATG	1 cut(s)	165
Hin6I	GCGC	3 cut(s)	61, 101, 159
HinP1I	GCGC	3 cut(s)	61, 101, 159
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	288
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	1 cut(s)	236
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	296
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	1 cut(s)	21
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 83, 86, 107, 158, 213
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	165
HspAI	GCGC	3 cut(s)	61, 101, 159
Ksp22I	TGATCA	1 cut(s)	259
KspI	CCGCGG	2 cut(s)	108, 156
Kzo9I	GATC	1 cut(s)	259
LpnPI	CCDG	6 cut(s)	7, 94, 206, 221, 233, 301
Lsp1109I	GCAGC	4 cut(s)	73, 89, 189, 256
LweI	GCATC	2 cut(s)	136, 189
MaeII	ACGT	1 cut(s)	48
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	1 cut(s)	58
MfeI	CAATTG	2 cut(s)	54, 116
MluCI	AATT	2 cut(s)	54, 116
MnlI	CCTC	5 cut(s)	74, 147, 192, 244, 247
MslI	CAYNNNNRTG	1 cut(s)	297
MspA1I	CMGCKG	2 cut(s)	107, 155
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	221
MunI	CAATTG	2 cut(s)	54, 116
MvaI	CCWGG	1 cut(s)	221
MvnI	CGCG	2 cut(s)	107, 155
MwoI	GCNNNNNNNGC	6 cut(s)	38, 83, 86, 107, 158, 213
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	1 cut(s)	165
NmeAIII	GCCGAG	1 cut(s)	207
NotI	GCGGCCGC	1 cut(s)	150
OliI	CACNNNNGTG	1 cut(s)	297
PkrI	GCNGC	7 cut(s)	79, 88, 109, 151, 154, 179, 246
Ppu21I	YACGTR	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	219
PspGI	CCWGG	1 cut(s)	219
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
RseI	CAYNNNNRTG	1 cut(s)	297
SacII	CCGCGG	2 cut(s)	108, 156
SatI	GCNGC	7 cut(s)	78, 87, 108, 150, 153, 178, 245
Sau3AI	GATC	1 cut(s)	259
ScrFI	CCNGG	1 cut(s)	221
SetI	ASST	2 cut(s)	51, 88
SfaNI	GCATC	2 cut(s)	136, 189
Sfr303I	CCGCGG	2 cut(s)	108, 156
SgrBI	CCGCGG	2 cut(s)	108, 156
SmiMI	CAYNNNNRTG	1 cut(s)	297
Sse9I	AATT	2 cut(s)	54, 116
SsiI	CCGC	6 cut(s)	105, 107, 149, 153, 155, 273
StyD4I	CCNGG	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	296
TaiI	ACGT	1 cut(s)	51
TasI	AATT	2 cut(s)	54, 116
TauI	GCSGC	3 cut(s)	110, 152, 155
TscAI	CASTG	1 cut(s)	214
TseI	GCWGC	4 cut(s)	77, 86, 177, 244
TspDTI	ATGAA	1 cut(s)	115
TspRI	CASTG	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.