Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0025115

Physical Location & Seq

Genomic Coordinates Reverse (-)

30358804 .. 30359130

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG296300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGCGATGACTCGCACGCAAGCGTGCAGGCAGATGGCGAAGTCGGCGACGCACGTAGCAATTGTGCGCCTCTTCTCCACGGCAGCCAGAGCTGCCACCAATAATGCGCCCGCGGCCAAACAATTGTCCTCCATAATCATTCCTCTAAAGGATGCGGCCGCGGGCGCATGGTGGAACAACGGCAGCATCATTTACCCCGTTCAGAGGGTACGCAGTGGTAGCACCCTGGCTCTCGGCCGTCAGGAGAAGCAGCAAGAGGAGGCTGATCATAGCAACTCCGCCGTTTCGGTTGCCGGACACGGTGGTGGTAATAAGGACGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009916 GO:0009987 GO:0015980 GO:0016491 GO:0016679 GO:0016682 GO:0023052 GO:0031930 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AOX

Protein Analysis

108

Amino Acids

11.39

Weight (kDa)

9.74

Isoelectric Point (pI)

41.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025115)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0213871
rosa_samantha	Rh7AG277300 Rh7CG296300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	113, 161
AciI	CCGC	6 cut(s)	111, 113, 155, 159, 161, 279
AcoI	YGGCCR	3 cut(s)	114, 156, 235
AfaI	GTAC	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	204
AjnI	CCWGG	1 cut(s)	225
AleI	CACNNNNGTG	1 cut(s)	303
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
AoxI	GGCC	3 cut(s)	114, 156, 235
ApeKI	GCWGC	4 cut(s)	83, 92, 183, 250
AspLEI	GCGC	3 cut(s)	69, 109, 167
BbvI	GCAGC	4 cut(s)	79, 95, 195, 262
BccI	CCATC	1 cut(s)	28
BceAI	ACGGC	4 cut(s)	96, 196, 222, 266
BciT130I	CCWGG	1 cut(s)	227
BclI	TGATCA	1 cut(s)	265
BisI	GCNGC	7 cut(s)	84, 93, 114, 156, 159, 184, 251
BlsI	GCNGC	7 cut(s)	85, 94, 115, 157, 160, 185, 252
Bme1390I	CCNGG	1 cut(s)	227
BmrFI	CCNGG	1 cut(s)	227
BmsI	GCATC	2 cut(s)	142, 195
BsaAI	YACGTR	1 cut(s)	55
BsaJI	CCNNGG	4 cut(s)	78, 111, 159, 225
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
BseBI	CCWGG	1 cut(s)	227
BseDI	CCNNGG	4 cut(s)	78, 111, 159, 225
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseRI	GAGGAG	1 cut(s)	272
BseX3I	CGGCCG	2 cut(s)	156, 235
BseXI	GCAGC	4 cut(s)	79, 95, 195, 262
BsgI	GTGCAG	1 cut(s)	46
Bsh1236I	CGCG	2 cut(s)	113, 161
Bsh1285I	CGRYCG	2 cut(s)	159, 238
BshFI	GGCC	3 cut(s)	116, 158, 237
BsiEI	CGRYCG	2 cut(s)	159, 238
BsiSI	CCGG	1 cut(s)	294
BslI	CCNNNNNNNGG	1 cut(s)	204
BsnI	GGCC	3 cut(s)	116, 158, 237
Bsp143I	GATC	1 cut(s)	265
BspACI	CCGC	6 cut(s)	111, 113, 155, 159, 161, 279
BspANI	GGCC	3 cut(s)	116, 158, 237
BspFNI	CGCG	2 cut(s)	113, 161
BssECI	CCNNGG	4 cut(s)	78, 111, 159, 225
BssMI	GATC	1 cut(s)	265
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	302
Bst6I	CTCTTC	1 cut(s)	77
BstBAI	YACGTR	1 cut(s)	55
BstC8I	GCNNGC	6 cut(s)	17, 21, 25, 29, 111, 163
BstDSI	CCRYGG	3 cut(s)	78, 111, 159
BstF5I	GGATG	1 cut(s)	157
BstFNI	CGCG	2 cut(s)	113, 161
BstHHI	GCGC	3 cut(s)	69, 109, 167
BstKTI	GATC	1 cut(s)	268
BstMBI	GATC	1 cut(s)	265
BstMCI	CGRYCG	2 cut(s)	159, 238
BstMWI	GCNNNNNNNGC	6 cut(s)	44, 89, 92, 113, 164, 219
BstNI	CCWGG	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	225
BstUI	CGCG	2 cut(s)	113, 161
BstV1I	GCAGC	4 cut(s)	79, 95, 195, 262
BstZI	CGGCCG	2 cut(s)	156, 235
BsuRI	GGCC	3 cut(s)	116, 158, 237
BtgI	CCRYGG	3 cut(s)	78, 111, 159
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	157
BtsI	GCAGTG	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	6 cut(s)	17, 21, 25, 29, 111, 163
CciNI	GCGGCCGC	1 cut(s)	156
CfoI	GCGC	3 cut(s)	69, 109, 167
Cfr42I	CCGCGG	2 cut(s)	114, 162
CseI	GACGC	1 cut(s)	58
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	1 cut(s)	168
CviJI	RGCY	7 cut(s)	86, 92, 116, 158, 230, 237, 263
CviKI_1	RGCY	7 cut(s)	86, 92, 116, 158, 230, 237, 263
CviQI	GTAC	1 cut(s)	209
DpnI	GATC	1 cut(s)	267
DpnII	GATC	1 cut(s)	265
EaeI	YGGCCR	3 cut(s)	114, 156, 235
EagI	CGGCCG	2 cut(s)	156, 235
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
EciI	GGCGGA	1 cut(s)	268
EclXI	CGGCCG	2 cut(s)	156, 235
Eco52I	CGGCCG	2 cut(s)	156, 235
EcoRII	CCWGG	1 cut(s)	225
FaeI	CATG	1 cut(s)	171
FaiI	YATR	3 cut(s)	134, 169, 270
FatI	CATG	1 cut(s)	167
FauI	CCCGC	2 cut(s)	118, 154
FbaI	TGATCA	1 cut(s)	265
Fnu4HI	GCNGC	7 cut(s)	84, 93, 114, 156, 159, 184, 251
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	7 cut(s)	84, 93, 114, 156, 159, 184, 251
GlaI	GCGC	3 cut(s)	68, 108, 166
GluI	GCNGC	7 cut(s)	84, 93, 114, 156, 159, 184, 251
HaeIII	GGCC	3 cut(s)	116, 158, 237
HapII	CCGG	1 cut(s)	294
HgaI	GACGC	1 cut(s)	58
HhaI	GCGC	3 cut(s)	69, 109, 167
Hin1II	CATG	1 cut(s)	171
Hin6I	GCGC	3 cut(s)	67, 107, 165
HinP1I	GCGC	3 cut(s)	67, 107, 165
HinfI	GANTC	1 cut(s)	10
HpaII	CCGG	1 cut(s)	294
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	1 cut(s)	242
Hpy99I	CGWCG	1 cut(s)	52
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	1 cut(s)	27
HpyF10VI	GCNNNNNNNGC	6 cut(s)	44, 89, 92, 113, 164, 219
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	171
HspAI	GCGC	3 cut(s)	67, 107, 165
Ksp22I	TGATCA	1 cut(s)	265
KspI	CCGCGG	2 cut(s)	114, 162
Kzo9I	GATC	1 cut(s)	265
LpnPI	CCDG	6 cut(s)	13, 100, 212, 227, 239, 307
Lsp1109I	GCAGC	4 cut(s)	79, 95, 195, 262
LweI	GCATC	2 cut(s)	142, 195
MaeII	ACGT	1 cut(s)	54
MalI	GATC	1 cut(s)	267
MboI	GATC	1 cut(s)	265
MboII	GAAGA	1 cut(s)	64
MfeI	CAATTG	2 cut(s)	60, 122
MluCI	AATT	2 cut(s)	60, 122
MlyI	GAGTC	1 cut(s)	4
MnlI	CCTC	6 cut(s)	80, 139, 153, 198, 250, 253
MslI	CAYNNNNRTG	1 cut(s)	303
MspA1I	CMGCKG	2 cut(s)	113, 161
MspI	CCGG	1 cut(s)	294
MspR9I	CCNGG	1 cut(s)	227
MunI	CAATTG	2 cut(s)	60, 122
MvaI	CCWGG	1 cut(s)	227
MvnI	CGCG	2 cut(s)	113, 161
MwoI	GCNNNNNNNGC	6 cut(s)	44, 89, 92, 113, 164, 219
NdeII	GATC	1 cut(s)	265
NlaIII	CATG	1 cut(s)	171
NmeAIII	GCCGAG	1 cut(s)	213
NotI	GCGGCCGC	1 cut(s)	156
OliI	CACNNNNGTG	1 cut(s)	303
PkrI	GCNGC	7 cut(s)	85, 94, 115, 157, 160, 185, 252
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
Ppu21I	YACGTR	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	225
PspGI	CCWGG	1 cut(s)	225
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
RseI	CAYNNNNRTG	1 cut(s)	303
SacII	CCGCGG	2 cut(s)	114, 162
SatI	GCNGC	7 cut(s)	84, 93, 114, 156, 159, 184, 251
Sau3AI	GATC	1 cut(s)	265
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	227
SetI	ASST	2 cut(s)	57, 94
SfaNI	GCATC	2 cut(s)	142, 195
Sfr303I	CCGCGG	2 cut(s)	114, 162
SgrBI	CCGCGG	2 cut(s)	114, 162
SmiMI	CAYNNNNRTG	1 cut(s)	303
Sse9I	AATT	2 cut(s)	60, 122
SsiI	CCGC	6 cut(s)	111, 113, 155, 159, 161, 279
StyD4I	CCNGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	302
TaiI	ACGT	1 cut(s)	57
TasI	AATT	2 cut(s)	60, 122
TauI	GCSGC	3 cut(s)	116, 158, 161
TscAI	CASTG	1 cut(s)	220
TseI	GCWGC	4 cut(s)	83, 92, 183, 250
TspRI	CASTG	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.