Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030498

Physical Location & Seq

Genomic Coordinates Reverse (-)

34363312 .. 34365725

Gene Structure 2414 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19393

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGCGCGGAGTGACTGGGAAGTGTGCGCAGCTAGCGGAGCTTAGTGGCGAAAACATTAACATTACATATAAGCCGGACGGGACGCACATTGCTGTTGGTAATAGGGACGATGAACTAACGATTTTGGATGTTCAGAAATTTAAGCCAATTCACAAGAGGAAGTTCAATTATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000346 GO:0000347 GO:0000445 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031461 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044403 GO:0044417 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044766 GO:0045184 GO:0046483 GO:0046784 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051701 GO:0051704 GO:0051716 GO:0051836 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080008 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1902579 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00520 ko03013 ko03040 map00520 map03013 map03040

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

58

Amino Acids

6.57

Weight (kDa)

7.9

Isoelectric Point (pI)

27.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	5 - 58	1.8e-12	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0030498)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0216731
rosa_wichuraiana	Rw3G018240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	27
AccII	CGCG	1 cut(s)	6
AciI	CCGC	2 cut(s)	6, 35
AcsI	RAATTY	1 cut(s)	137
AgsI	TTSAA	1 cut(s)	166
AluBI	AGCT	2 cut(s)	31, 40
AluI	AGCT	2 cut(s)	31, 40
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	137
AspLEI	GCGC	2 cut(s)	6, 28
AsuNHI	GCTAGC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	40
BfaI	CTAG	1 cut(s)	32
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
BmrI	ACTGGG	1 cut(s)	24
BmtI	GCTAGC	1 cut(s)	35
BmuI	ACTGGG	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	19
Bse3DI	GCAATG	1 cut(s)	87
BseGI	GGATG	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	40
Bsh1236I	CGCG	1 cut(s)	6
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	2 cut(s)	94, 119
BsmFI	GGGAC	2 cut(s)	94, 119
BspACI	CCGC	2 cut(s)	6, 35
BspFNI	CGCG	1 cut(s)	6
BspOI	GCTAGC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	41
BstF5I	GGATG	1 cut(s)	133
BstFNI	CGCG	1 cut(s)	6
BstHHI	GCGC	2 cut(s)	6, 28
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 37
BstUI	CGCG	1 cut(s)	6
BstV1I	GCAGC	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	33
CfoI	GCGC	2 cut(s)	6, 28
CseI	GACGC	1 cut(s)	91
CviJI	RGCY	4 cut(s)	31, 40, 73, 145
CviKI_1	RGCY	4 cut(s)	31, 40, 73, 145
DdeI	CTNAG	1 cut(s)	41
FaiI	YATR	3 cut(s)	67, 69, 171
FaqI	GGGAC	2 cut(s)	94, 119
Fnu4HI	GCNGC	1 cut(s)	29
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	1 cut(s)	32
FspI	TGCGCA	1 cut(s)	27
GlaI	GCGC	2 cut(s)	5, 27
GluI	GCNGC	1 cut(s)	29
HapII	CCGG	1 cut(s)	74
HgaI	GACGC	1 cut(s)	91
HhaI	GCGC	2 cut(s)	6, 28
Hin6I	GCGC	2 cut(s)	4, 26
HinP1I	GCGC	2 cut(s)	4, 26
HpaII	CCGG	1 cut(s)	74
Hpy188I	TCNGA	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 37
HpyF3I	CTNAG	1 cut(s)	41
HspAI	GCGC	2 cut(s)	4, 26
LmnI	GCTCC	1 cut(s)	37
LpnPI	CCDG	1 cut(s)	87
Lsp1109I	GCAGC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	10
MluCI	AATT	3 cut(s)	137, 147, 166
MnlI	CCTC	1 cut(s)	150
MseI	TTAA	2 cut(s)	57, 141
MspI	CCGG	1 cut(s)	74
MvnI	CGCG	1 cut(s)	6
MwoI	GCNNNNNNNGC	2 cut(s)	32, 37
NheI	GCTAGC	1 cut(s)	31
NmuCI	GTSAC	1 cut(s)	10
NsbI	TGCGCA	1 cut(s)	27
PkrI	GCNGC	1 cut(s)	30
SaqAI	TTAA	2 cut(s)	57, 141
SatI	GCNGC	1 cut(s)	29
SetI	ASST	2 cut(s)	33, 42
SgeI	CNNG	6 cut(s)	17, 27, 44, 86, 91, 166
Sse9I	AATT	3 cut(s)	137, 147, 166
SsiI	CCGC	2 cut(s)	6, 35
SspMI	CTAG	1 cut(s)	32
TasI	AATT	3 cut(s)	137, 147, 166
Tru1I	TTAA	2 cut(s)	57, 141
Tru9I	TTAA	2 cut(s)	57, 141
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	1 cut(s)	28
Tsp45I	GTSAC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	126
XapI	RAATTY	1 cut(s)	137
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.