Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0030498

Physical Location & Seq

Genomic Coordinates Reverse (-)

20251710 .. 20252780

Gene Structure 1071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G018240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGACGGTGTATGTGATTGTGTATTTGGGTGCTGCAGCTGGGAAGTGTGCGCAGCTAGCGGAGCTTAGTGGCGAAAACATTAACATTACATATAAGCCGGACGGGACGCACATTGCTGTTGGTAATAGGGACGATGAACTAACGATTTTGGATGTTCAGAAATTTAAGCCAATTCACAAGAGGAAGTTCAACTATGAGAAGTTAATGGAAAATGCTTTAGAACCCACATTTTGGCCAATATACGATTACGACGATTTGATAGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000346 GO:0000347 GO:0000445 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0008104 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010267 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0015031 GO:0015833 GO:0015931 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031461 GO:0031503 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044403 GO:0044417 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044766 GO:0045184 GO:0046483 GO:0046784 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050896 GO:0051028 GO:0051168 GO:0051169 GO:0051179 GO:0051234 GO:0051236 GO:0051641 GO:0051649 GO:0051701 GO:0051704 GO:0051716 GO:0051836 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0070918 GO:0071166 GO:0071310 GO:0071359 GO:0071407 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080008 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1902494 GO:1902579 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00520 ko03013 ko03040 map00520 map03013 map03040

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

88

Amino Acids

10.01

Weight (kDa)

4.97

Isoelectric Point (pI)

29.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	11 - 66	2e-12	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0030498)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0216731
rosa_wichuraiana	Rw3G018240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	51
AccB7I	CCANNNNNTGG	1 cut(s)	231
AciI	CCGC	1 cut(s)	59
AcoI	YGGCCR	1 cut(s)	233
AcsI	RAATTY	1 cut(s)	161
AfiI	CCNNNNNNNGG	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	190
AluBI	AGCT	3 cut(s)	38, 55, 64
AluI	AGCT	3 cut(s)	38, 55, 64
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	3 cut(s)	32, 35, 52
ApoI	RAATTY	1 cut(s)	161
AspLEI	GCGC	1 cut(s)	52
AsuNHI	GCTAGC	1 cut(s)	55
BalI	TGGCCA	1 cut(s)	235
BbvI	GCAGC	3 cut(s)	19, 47, 64
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	33
BisI	GCNGC	3 cut(s)	33, 36, 53
BlsI	GCNGC	3 cut(s)	34, 37, 54
BmtI	GCTAGC	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse3DI	GCAATG	1 cut(s)	111
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	1 cut(s)	111
BseXI	GCAGC	3 cut(s)	19, 47, 64
BseYI	CCCAGC	1 cut(s)	38
BshFI	GGCC	1 cut(s)	235
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	2 cut(s)	118, 143
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmFI	GGGAC	2 cut(s)	118, 143
BsnI	GGCC	1 cut(s)	235
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	235
BspMAI	CTGCAG	1 cut(s)	37
BspOI	GCTAGC	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	111
Bst4CI	ACNGT	1 cut(s)	7
BstC8I	GCNNGC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	65
BstF5I	GGATG	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 61
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	3 cut(s)	19, 47, 64
BsuRI	GGCC	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	57
CfoI	GCGC	1 cut(s)	52
CseI	GACGC	1 cut(s)	115
CviJI	RGCY	6 cut(s)	38, 55, 64, 97, 169, 235
CviKI_1	RGCY	6 cut(s)	38, 55, 64, 97, 169, 235
DdeI	CTNAG	1 cut(s)	65
EaeI	YGGCCR	1 cut(s)	233
FaiI	YATR	5 cut(s)	12, 91, 93, 195, 241
FaqI	GGGAC	2 cut(s)	118, 143
Fnu4HI	GCNGC	3 cut(s)	33, 36, 53
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	3 cut(s)	33, 36, 53
FspBI	CTAG	1 cut(s)	56
FspI	TGCGCA	1 cut(s)	51
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	3 cut(s)	33, 36, 53
GsaI	CCCAGC	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	1 cut(s)	115
HhaI	GCGC	1 cut(s)	52
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HpaII	CCGG	1 cut(s)	98
Hpy188I	TCNGA	1 cut(s)	159
Hpy99I	CGWCG	1 cut(s)	254
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4V	TGCA	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 61
HpyF3I	CTNAG	1 cut(s)	65
HspAI	GCGC	1 cut(s)	50
LmnI	GCTCC	1 cut(s)	61
LpnPI	CCDG	2 cut(s)	24, 111
Lsp1109I	GCAGC	3 cut(s)	19, 47, 64
MaeI	CTAG	1 cut(s)	56
MlsI	TGGCCA	1 cut(s)	235
MluCI	AATT	2 cut(s)	161, 171
MluNI	TGGCCA	1 cut(s)	235
MnlI	CCTC	1 cut(s)	174
Mox20I	TGGCCA	1 cut(s)	235
MscI	TGGCCA	1 cut(s)	235
MseI	TTAA	3 cut(s)	81, 165, 203
Msp20I	TGGCCA	1 cut(s)	235
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	2 cut(s)	56, 61
NheI	GCTAGC	1 cut(s)	55
NsbI	TGCGCA	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	1 cut(s)	249
PflMI	CCANNNNNTGG	1 cut(s)	231
PkrI	GCNGC	3 cut(s)	34, 37, 54
PspFI	CCCAGC	1 cut(s)	38
PstI	CTGCAG	1 cut(s)	37
PvuII	CAGCTG	1 cut(s)	38
SaqAI	TTAA	3 cut(s)	81, 165, 203
SatI	GCNGC	3 cut(s)	33, 36, 53
SetI	ASST	4 cut(s)	40, 57, 66, 265
SfcI	CTRYAG	1 cut(s)	33
SgeI	CNNG	5 cut(s)	51, 68, 110, 115, 190
Sse9I	AATT	2 cut(s)	161, 171
SsiI	CCGC	1 cut(s)	59
SspMI	CTAG	1 cut(s)	56
TaaI	ACNGT	1 cut(s)	7
TasI	AATT	2 cut(s)	161, 171
Tru1I	TTAA	3 cut(s)	81, 165, 203
Tru9I	TTAA	3 cut(s)	81, 165, 203
TseI	GCWGC	3 cut(s)	32, 35, 52
TspDTI	ATGAA	1 cut(s)	150
Van91I	CCANNNNNTGG	1 cut(s)	231
XapI	RAATTY	1 cut(s)	161
XspI	CTAG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.