Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030475

Physical Location & Seq

Genomic Coordinates Reverse (-)

38580426 .. 38580695

Gene Structure 270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19680

Sequence Viewer

CDS Protein Promoter (2k)

Length: 270 bp

ATGCACTTGGGGATGCTAGTAGCTTTGGTAAATTCCTCCTTTCGTGGTCAGAAATGGCCCGAAACAAGCCAAATCTCCTGCGTACCGGATCACCAGACAAACCTCCGAATCAGTGCACGCAACCCTCCTAGGTACCACTCCTCCTTGGACCAAAGTTTTGTCAAGTGCACCATAGAACAGATCATGAATATCCCAACACCCAAAGCCTTGGTTAAGCGGCTTTATTTCATCGATAATTCGAGCATTAATCAGTTGCAAAGTCAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009832 GO:0009987 GO:0010345 GO:0010383 GO:0010393 GO:0016043 GO:0016051 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019438 GO:0019748 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0050734 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

89

Amino Acids

10.13

Weight (kDa)

9.51

Isoelectric Point (pI)

66.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030475)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0219881
rosa_multiflora	Rmu_co8247981.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	132
AccB1I	GGYRCC	1 cut(s)	132
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	31
AfaI	GTAC	2 cut(s)	84, 134
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw21I	GWGCWC	2 cut(s)	118, 170
Alw44I	GTGCAC	2 cut(s)	114, 166
AlwI	GGATC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	56
ApaLI	GTGCAC	2 cut(s)	114, 166
ApoI	RAATTY	1 cut(s)	31
ArsI	GACNNNNNNTTYG	2 cut(s)	140, 172
AseI	ATTAAT	1 cut(s)	246
Asp718I	GGTACC	1 cut(s)	132
AspA2I	CCTAGG	1 cut(s)	128
AspS9I	GGNCC	2 cut(s)	57, 148
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	148
AvrII	CCTAGG	1 cut(s)	128
BaeGI	GKGCMC	2 cut(s)	118, 170
BanI	GGYRCC	1 cut(s)	132
Bbv12I	GWGCWC	2 cut(s)	118, 170
BfaI	CTAG	2 cut(s)	17, 129
BisI	GCNGC	1 cut(s)	218
BlnI	CCTAGG	1 cut(s)	128
BlsI	GCNGC	1 cut(s)	219
Bme18I	GGWCC	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	57, 148
BmiI	GGNNCC	1 cut(s)	134
BmsI	GCATC	1 cut(s)	3
Bsa29I	ATCGAT	1 cut(s)	231
BsaJI	CCNNGG	3 cut(s)	128, 144, 207
BsaWI	WCCGGW	1 cut(s)	85
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
BseCI	ATCGAT	1 cut(s)	231
BseDI	CCNNGG	3 cut(s)	128, 144, 207
BseGI	GGATG	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	130
BseSI	GKGCMC	2 cut(s)	118, 170
BshFI	GGCC	1 cut(s)	58
BshNI	GGYRCC	1 cut(s)	132
BshVI	ATCGAT	1 cut(s)	231
BsiHKAI	GWGCWC	2 cut(s)	118, 170
BsiSI	CCGG	1 cut(s)	86
BsnI	GGCC	1 cut(s)	58
Bsp1286I	GDGCHC	2 cut(s)	118, 170
Bsp143I	GATC	2 cut(s)	88, 180
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	1 cut(s)	58
BspDI	ATCGAT	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	183
BspLI	GGNNCC	1 cut(s)	134
BspPI	GGATC	1 cut(s)	96
BspT107I	GGYRCC	1 cut(s)	132
BssECI	CCNNGG	3 cut(s)	128, 144, 207
BssMI	GATC	2 cut(s)	88, 180
BssT1I	CCWWGG	3 cut(s)	128, 144, 207
BstC8I	GCNNGC	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	18
BstKTI	GATC	2 cut(s)	91, 183
BstMBI	GATC	2 cut(s)	88, 180
BstSLI	GKGCMC	2 cut(s)	118, 170
BstXI	CCANNNNNNTGG	1 cut(s)	208
Bsu15I	ATCGAT	1 cut(s)	231
BsuRI	GGCC	1 cut(s)	58
BsuTUI	ATCGAT	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	18
BtsIMutI	CAGTG	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	118
CciI	TCATGA	1 cut(s)	183
Cfr13I	GGNCC	2 cut(s)	57, 148
ClaI	ATCGAT	1 cut(s)	231
Csp6I	GTAC	2 cut(s)	83, 133
CviAII	CATG	2 cut(s)	184, 267
CviJI	RGCY	5 cut(s)	23, 58, 69, 206, 220
CviKI_1	RGCY	5 cut(s)	23, 58, 69, 206, 220
CviQI	GTAC	2 cut(s)	83, 133
DpnI	GATC	2 cut(s)	90, 182
DpnII	GATC	2 cut(s)	88, 180
Eco130I	CCWWGG	3 cut(s)	128, 144, 207
Eco47I	GGWCC	1 cut(s)	148
EcoT14I	CCWWGG	3 cut(s)	128, 144, 207
ErhI	CCWWGG	3 cut(s)	128, 144, 207
FaeI	CATG	2 cut(s)	187, 270
FaiI	YATR	3 cut(s)	173, 185, 268
FatI	CATG	2 cut(s)	183, 266
Fnu4HI	GCNGC	1 cut(s)	218
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	218
FspBI	CTAG	2 cut(s)	17, 129
GluI	GCNGC	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	58
HapII	CCGG	1 cut(s)	86
Hin1II	CATG	2 cut(s)	187, 270
HinfI	GANTC	1 cut(s)	108
HpaII	CCGG	1 cut(s)	86
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	2 cut(s)	116, 168
Hpy188I	TCNGA	2 cut(s)	51, 107
Hpy188III	TCNNGA	1 cut(s)	184
Hpy8I	GTNNAC	2 cut(s)	116, 168
HpyCH4V	TGCA	4 cut(s)	4, 116, 168, 256
Hsp92II	CATG	2 cut(s)	187, 270
KpnI	GGTACC	1 cut(s)	136
Kzo9I	GATC	2 cut(s)	88, 180
LpnPI	CCDG	4 cut(s)	91, 99, 107, 248
LweI	GCATC	1 cut(s)	3
MaeI	CTAG	2 cut(s)	17, 129
MalI	GATC	2 cut(s)	90, 182
MboI	GATC	2 cut(s)	88, 180
MhlI	GDGCHC	2 cut(s)	118, 170
MluCI	AATT	2 cut(s)	31, 235
MnlI	CCTC	4 cut(s)	46, 113, 135, 151
MseI	TTAA	2 cut(s)	213, 246
MspI	CCGG	1 cut(s)	86
NdeII	GATC	2 cut(s)	88, 180
NlaIII	CATG	2 cut(s)	187, 270
NlaIV	GGNNCC	1 cut(s)	134
PagI	TCATGA	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	219
PshBI	ATTAAT	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	134
PspPI	GGNCC	2 cut(s)	57, 148
RsaI	GTAC	2 cut(s)	84, 134
RsaNI	GTAC	2 cut(s)	83, 133
SaqAI	TTAA	2 cut(s)	213, 246
SatI	GCNGC	1 cut(s)	218
Sau3AI	GATC	2 cut(s)	88, 180
Sau96I	GGNCC	2 cut(s)	57, 148
SduI	GDGCHC	2 cut(s)	118, 170
SetI	ASST	3 cut(s)	25, 105, 134
SfaNI	GCATC	1 cut(s)	3
SinI	GGWCC	1 cut(s)	148
Sse9I	AATT	2 cut(s)	31, 235
SsiI	CCGC	1 cut(s)	217
SspMI	CTAG	2 cut(s)	17, 129
StyI	CCWWGG	3 cut(s)	128, 144, 207
TaqI	TCGA	2 cut(s)	231, 239
TasI	AATT	2 cut(s)	31, 235
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	2 cut(s)	213, 246
Tru9I	TTAA	2 cut(s)	213, 246
TscAI	CASTG	1 cut(s)	118
TspDTI	ATGAA	2 cut(s)	200, 217
TspRI	CASTG	1 cut(s)	118
VneI	GTGCAC	2 cut(s)	114, 166
VpaK11BI	GGWCC	1 cut(s)	148
VspI	ATTAAT	1 cut(s)	246
XapI	RAATTY	1 cut(s)	31
XmaJI	CCTAGG	1 cut(s)	128
XspI	CTAG	2 cut(s)	17, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.