Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8247981.1

Orthogroup ID

OG0030475

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 611

Gene Structure 611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8247981.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 484 bp

atgagccccgacccaaacaagagagaggagggagaatggactgaaaccataagcccagcccacacccactgccctcaatctgcaactcagactgtcgatcaccggaaccctaggaagcttgtcggcggcactgctaccacaccaagcaagcaagccgccattgccatttcggcggacgacctcgatcttcaaccatccctgccacctcgagggacctggaaaccagatccgtcgccgcctcacagccacttctcatccaaagatgcccgaaacaagccaatctcctgtgtaccggatcaccagagaaacctccgaatcagtgcacgcaaccctcctaggtaccactcctccttggaccaaagttttgtcaagtgcaccatggaagagatcatggatatcccaacacccaaaaccttggttaagctgctttatttcatcgataattcgagcattaatcagctgcaaagtcaagcatgtagaaatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009832 GO:0009987 GO:0010345 GO:0010383 GO:0010393 GO:0016043 GO:0016051 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019438 GO:0019748 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0050734 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Transferase

Protein Analysis

161

Amino Acids

17.96

Weight (kDa)

8.4

Isoelectric Point (pI)

62.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030475)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0219881
rosa_multiflora	Rmu_co8247981.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	207
Acc65I	GGTACC	1 cut(s)	339
AccB1I	GGYRCC	1 cut(s)	339
AciI	CCGC	4 cut(s)	126, 156, 173, 236
AclWI	GGATC	2 cut(s)	221, 303
AfaI	GTAC	2 cut(s)	291, 341
AfiI	CCNNNNNNNGG	1 cut(s)	209
AgsI	TTSAA	1 cut(s)	191
AjnI	CCWGG	1 cut(s)	215
AluBI	AGCT	3 cut(s)	118, 424, 460
AluI	AGCT	3 cut(s)	118, 424, 460
Alw21I	GWGCWC	2 cut(s)	325, 377
Alw44I	GTGCAC	2 cut(s)	321, 373
AlwI	GGATC	2 cut(s)	221, 303
Ama87I	CYCGRG	1 cut(s)	207
ApaLI	GTGCAC	2 cut(s)	321, 373
ApeKI	GCWGC	2 cut(s)	424, 460
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AseI	ATTAAT	1 cut(s)	453
Asp718I	GGTACC	1 cut(s)	339
AspA2I	CCTAGG	2 cut(s)	110, 335
AspS9I	GGNCC	2 cut(s)	213, 355
AsuHPI	GGTGA	2 cut(s)	92, 290
AvaI	CYCGRG	1 cut(s)	207
AvaII	GGWCC	2 cut(s)	213, 355
AvrII	CCTAGG	2 cut(s)	110, 335
BaeGI	GKGCMC	2 cut(s)	325, 377
BanI	GGYRCC	1 cut(s)	339
BanII	GRGCYC	1 cut(s)	8
Bbv12I	GWGCWC	2 cut(s)	325, 377
BbvI	GCAGC	2 cut(s)	411, 447
BccI	CCATC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	217
BfaI	CTAG	2 cut(s)	111, 336
BglI	GCCNNNNNGGC	1 cut(s)	170
BisI	GCNGC	5 cut(s)	127, 156, 236, 425, 461
BlnI	CCTAGG	2 cut(s)	110, 335
BlsI	GCNGC	5 cut(s)	128, 157, 237, 426, 462
Bme1390I	CCNGG	1 cut(s)	217
Bme18I	GGWCC	2 cut(s)	213, 355
BmeT110I	CYCGRG	1 cut(s)	207
BmgT120I	GGNCC	2 cut(s)	213, 355
BmiI	GGNNCC	3 cut(s)	107, 214, 341
BmrFI	CCNGG	1 cut(s)	217
BmsI	GCATC	1 cut(s)	253
Bsa29I	ATCGAT	1 cut(s)	438
BsaJI	CCNNGG	5 cut(s)	110, 335, 351, 378, 414
BsaWI	WCCGGW	2 cut(s)	102, 292
BsaXI	ACNNNNNCTCC	2 cut(s)	332, 362
Bsc4I	CCNNNNNNNGG	1 cut(s)	209
Bse3DI	GCAATG	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	217
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	5 cut(s)	110, 335, 351, 378, 414
BseGI	GGATG	2 cut(s)	194, 254
BseLI	CCNNNNNNNGG	1 cut(s)	209
BseMI	GCAATG	1 cut(s)	159
BseMII	CTCAG	1 cut(s)	101
BseRI	GAGGAG	2 cut(s)	41, 337
BseSI	GKGCMC	2 cut(s)	325, 377
BseXI	GCAGC	2 cut(s)	411, 447
BseYI	CCCAGC	1 cut(s)	55
BshNI	GGYRCC	1 cut(s)	339
BshVI	ATCGAT	1 cut(s)	438
BsiHKAI	GWGCWC	2 cut(s)	325, 377
BsiHKCI	CYCGRG	1 cut(s)	207
BsiSI	CCGG	2 cut(s)	103, 293
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	226
BsoBI	CYCGRG	1 cut(s)	207
Bsp1286I	GDGCHC	3 cut(s)	8, 325, 377
Bsp143I	GATC	5 cut(s)	97, 184, 226, 295, 387
Bsp19I	CCATGG	1 cut(s)	378
BspACI	CCGC	4 cut(s)	126, 156, 173, 236
BspCNI	CTCAG	1 cut(s)	100
BspDI	ATCGAT	1 cut(s)	438
BspLI	GGNNCC	3 cut(s)	107, 214, 341
BspPI	GGATC	2 cut(s)	221, 303
BspT107I	GGYRCC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	159
BssECI	CCNNGG	5 cut(s)	110, 335, 351, 378, 414
BssMI	GATC	5 cut(s)	97, 184, 226, 295, 387
BssT1I	CCWWGG	5 cut(s)	110, 335, 351, 378, 414
Bst2UI	CCWGG	1 cut(s)	217
Bst4CI	ACNGT	1 cut(s)	94
Bst6I	CTCTTC	1 cut(s)	378
BstC8I	GCNNGC	3 cut(s)	149, 153, 325
BstDEI	CTNAG	1 cut(s)	87
BstDSI	CCRYGG	1 cut(s)	378
BstF5I	GGATG	2 cut(s)	194, 254
BstKTI	GATC	5 cut(s)	100, 187, 229, 298, 390
BstMBI	GATC	5 cut(s)	97, 184, 226, 295, 387
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 170
BstNI	CCWGG	1 cut(s)	217
BstNSI	RCATGY	1 cut(s)	477
BstSCI	CCNGG	1 cut(s)	215
BstSLI	GKGCMC	2 cut(s)	325, 377
BstV1I	GCAGC	2 cut(s)	411, 447
BstX2I	RGATCY	1 cut(s)	226
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	226
Bsu15I	ATCGAT	1 cut(s)	438
BsuTUI	ATCGAT	1 cut(s)	438
BtgI	CCRYGG	1 cut(s)	378
BtsCI	GGATG	2 cut(s)	194, 254
BtsI	GCAGTG	2 cut(s)	67, 129
BtsIMutI	CAGTG	3 cut(s)	67, 129, 325
Cac8I	GCNNGC	3 cut(s)	149, 153, 325
Cfr13I	GGNCC	2 cut(s)	213, 355
ClaI	ATCGAT	1 cut(s)	438
Csp6I	GTAC	2 cut(s)	290, 340
CviAII	CATG	3 cut(s)	379, 391, 474
CviJI	RGCY	9 cut(s)	6, 54, 59, 118, 155, 246, 277, 424, 460
CviKI_1	RGCY	9 cut(s)	6, 54, 59, 118, 155, 246, 277, 424, 460
CviQI	GTAC	2 cut(s)	290, 340
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	5 cut(s)	99, 186, 228, 297, 389
DpnII	GATC	5 cut(s)	97, 184, 226, 295, 387
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
EciI	GGCGGA	1 cut(s)	188
Eco130I	CCWWGG	5 cut(s)	110, 335, 351, 378, 414
Eco24I	GRGCYC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	397
Eco47I	GGWCC	2 cut(s)	213, 355
Eco88I	CYCGRG	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	215
EcoRV	GATATC	1 cut(s)	397
EcoT14I	CCWWGG	5 cut(s)	110, 335, 351, 378, 414
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	5 cut(s)	110, 335, 351, 378, 414
FaeI	CATG	3 cut(s)	382, 394, 477
FaiI	YATR	4 cut(s)	50, 380, 392, 475
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	3 cut(s)	378, 390, 473
Fnu4HI	GCNGC	5 cut(s)	127, 156, 236, 425, 461
FokI	GGATG	2 cut(s)	181, 241
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	5 cut(s)	127, 156, 236, 425, 461
FspBI	CTAG	2 cut(s)	111, 336
GluI	GCNGC	5 cut(s)	127, 156, 236, 425, 461
GsaI	CCCAGC	1 cut(s)	59
HapII	CCGG	2 cut(s)	103, 293
Hin1II	CATG	3 cut(s)	382, 394, 477
HindIII	AAGCTT	1 cut(s)	116
HinfI	GANTC	1 cut(s)	315
HpaII	CCGG	2 cut(s)	103, 293
HphI	GGTGA	2 cut(s)	92, 290
Hpy166II	GTNNAC	3 cut(s)	290, 323, 375
Hpy188I	TCNGA	2 cut(s)	90, 314
Hpy8I	GTNNAC	3 cut(s)	290, 323, 375
Hpy99I	CGWCG	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	4 cut(s)	83, 323, 375, 463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 170
HpyF3I	CTNAG	1 cut(s)	87
Hsp92II	CATG	3 cut(s)	382, 394, 477
KpnI	GGTACC	1 cut(s)	343
Kzo9I	GATC	5 cut(s)	97, 184, 226, 295, 387
LpnPI	CCDG	9 cut(s)	69, 116, 202, 212, 229, 237, 298, 306, 314
Lsp1109I	GCAGC	2 cut(s)	411, 447
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	2 cut(s)	111, 336
MalI	GATC	5 cut(s)	99, 186, 228, 297, 389
MboI	GATC	5 cut(s)	97, 184, 226, 295, 387
MboII	GAAGA	2 cut(s)	179, 395
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	3 cut(s)	8, 325, 377
MluCI	AATT	1 cut(s)	442
MseI	TTAA	2 cut(s)	420, 453
MspA1I	CMGCKG	1 cut(s)	460
MspI	CCGG	2 cut(s)	103, 293
MspR9I	CCNGG	1 cut(s)	217
MvaI	CCWGG	1 cut(s)	217
MwoI	GCNNNNNNNGC	2 cut(s)	161, 170
NcoI	CCATGG	1 cut(s)	378
NdeII	GATC	5 cut(s)	97, 184, 226, 295, 387
NlaIII	CATG	3 cut(s)	382, 394, 477
NlaIV	GGNNCC	3 cut(s)	107, 214, 341
NspI	RCATGY	1 cut(s)	477
PaeR7I	CTCGAG	1 cut(s)	207
PfeI	GAWTC	1 cut(s)	315
PkrI	GCNGC	5 cut(s)	128, 157, 237, 426, 462
PpuMI	RGGWCCY	1 cut(s)	213
PshBI	ATTAAT	1 cut(s)	453
Psp5II	RGGWCCY	1 cut(s)	213
Psp6I	CCWGG	1 cut(s)	215
PspFI	CCCAGC	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	215
PspN4I	GGNNCC	3 cut(s)	107, 214, 341
PspPI	GGNCC	2 cut(s)	213, 355
PspPPI	RGGWCCY	1 cut(s)	213
PspXI	VCTCGAGB	1 cut(s)	207
PsuI	RGATCY	1 cut(s)	226
PvuII	CAGCTG	1 cut(s)	460
RsaI	GTAC	2 cut(s)	291, 341
RsaNI	GTAC	2 cut(s)	290, 340
SaqAI	TTAA	2 cut(s)	420, 453
SatI	GCNGC	5 cut(s)	127, 156, 236, 425, 461
Sau3AI	GATC	5 cut(s)	97, 184, 226, 295, 387
Sau96I	GGNCC	2 cut(s)	213, 355
ScrFI	CCNGG	1 cut(s)	217
SduI	GDGCHC	3 cut(s)	8, 325, 377
SetI	ASST	9 cut(s)	120, 183, 208, 218, 312, 341, 416, 426, 462
SfaNI	GCATC	1 cut(s)	253
Sfr274I	CTCGAG	1 cut(s)	207
SinI	GGWCC	2 cut(s)	213, 355
SlaI	CTCGAG	1 cut(s)	207
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
Sse9I	AATT	1 cut(s)	442
SsiI	CCGC	4 cut(s)	126, 156, 173, 236
SspMI	CTAG	2 cut(s)	111, 336
StyD4I	CCNGG	1 cut(s)	215
StyI	CCWWGG	5 cut(s)	110, 335, 351, 378, 414
TaaI	ACNGT	1 cut(s)	94
TaqI	TCGA	5 cut(s)	96, 183, 208, 438, 446
TasI	AATT	1 cut(s)	442
TauI	GCSGC	3 cut(s)	129, 158, 238
TfiI	GAWTC	1 cut(s)	315
Tru1I	TTAA	2 cut(s)	420, 453
Tru9I	TTAA	2 cut(s)	420, 453
TscAI	CASTG	3 cut(s)	74, 136, 325
TseI	GCWGC	2 cut(s)	424, 460
TspDTI	ATGAA	1 cut(s)	424
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	3 cut(s)	74, 136, 325
VneI	GTGCAC	2 cut(s)	321, 373
VpaK11BI	GGWCC	2 cut(s)	213, 355
VspI	ATTAAT	1 cut(s)	453
XceI	RCATGY	1 cut(s)	477
XhoI	CTCGAG	1 cut(s)	207
XmaJI	CCTAGG	2 cut(s)	110, 335
XspI	CTAG	2 cut(s)	111, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.