RchiOBHm_Chr7g0221371

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
42416050 .. 42416906
857 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19808

Sequence Viewer

Length: 336 bp
ATGCAAGACTTGGTAAAGCGAGAGGAATTGCTTCAATTTGCACAAAGTGCAATTACAGGATTGAAGATAAGTGCTGATCTTGGAAGAATAGATGATGAGGCCTCTAGGTTAAAGAAGAAGCTTGATGGAAGGACACCACTGCTGACGTCTCCTTCAACTGAAGGTCATGACAAAGTATCGGAAGAAACAAAATTGGAAACAGTACAGGTAAGGTGTGTTGTCATTAACTGTGCCTCACTGCCTCCTTGGTTTTGTATGATGAACTTAAGTGCAAAGACATTGAAACTGAAGAAGGAGCTTCACAGATTTCTGATGCTGTTTTTATTATTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.6

Weight (kDa)

8.86

Isoelectric Point (pI)

31.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030523)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0221371
rosa_samantha Rh7AG341700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 149
AcuI CTGAAG 2 cut(s) 180, 308
AcyI GRCGYC 1 cut(s) 146
AdeI CACNNNGTG 1 cut(s) 47
AfaI GTAC 1 cut(s) 204
AflII CTTAAG 1 cut(s) 265
AgsI TTSAA 4 cut(s) 35, 64, 156, 283
AluBI AGCT 2 cut(s) 121, 298
AluI AGCT 2 cut(s) 121, 298
Alw26I GTCTC 1 cut(s) 153
AoxI GGCC 1 cut(s) 99
Asp700I GAANNNNTTC 1 cut(s) 30
BccI CCATC 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 153
BfaI CTAG 1 cut(s) 105
BfrI CTTAAG 1 cut(s) 265
BmsI GCATC 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 245
BshFI GGCC 1 cut(s) 101
BsmAI GTCTC 1 cut(s) 153
BsmBI CGTCTC 1 cut(s) 153
BsnI GGCC 1 cut(s) 101
Bsp143I GATC 1 cut(s) 76
BspANI GGCC 1 cut(s) 101
BspHI TCATGA 1 cut(s) 166
BspTI CTTAAG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 245
BssMI GATC 1 cut(s) 76
BssNI GRCGYC 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 245
Bst4CI ACNGT 2 cut(s) 202, 230
BstACI GRCGYC 1 cut(s) 146
BstAFI CTTAAG 1 cut(s) 265
BstAPI GCANNNNNTGC 1 cut(s) 47
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 1 cut(s) 153
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 47
BsuRI GGCC 1 cut(s) 101
BtsI GCAGTG 2 cut(s) 137, 236
BtsIMutI CAGTG 2 cut(s) 137, 236
CciI TCATGA 1 cut(s) 166
Csp6I GTAC 1 cut(s) 203
CviAII CATG 1 cut(s) 167
CviJI RGCY 3 cut(s) 101, 121, 298
CviKI_1 RGCY 3 cut(s) 101, 121, 298
CviQI GTAC 1 cut(s) 203
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
DraIII CACNNNGTG 1 cut(s) 47
Eco130I CCWWGG 1 cut(s) 245
Eco147I AGGCCT 1 cut(s) 101
Eco57I CTGAAG 2 cut(s) 180, 308
EcoT14I CCWWGG 1 cut(s) 245
ErhI CCWWGG 1 cut(s) 245
Esp3I CGTCTC 1 cut(s) 153
FaeI CATG 1 cut(s) 170
FaiI YATR 2 cut(s) 168, 257
FatI CATG 1 cut(s) 166
FspBI CTAG 1 cut(s) 105
HaeIII GGCC 1 cut(s) 101
Hin1I GRCGYC 1 cut(s) 146
Hin1II CATG 1 cut(s) 170
HindIII AAGCTT 1 cut(s) 119
Hpy188I TCNGA 2 cut(s) 181, 312
Hpy188III TCNNGA 1 cut(s) 167
HpyAV CCTTC 4 cut(s) 123, 155, 162, 286
HpyCH4III ACNGT 2 cut(s) 202, 230
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 4 cut(s) 4, 41, 50, 272
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 146
Hsp92I GRCGYC 1 cut(s) 146
Hsp92II CATG 1 cut(s) 170
Kzo9I GATC 1 cut(s) 76
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 2 cut(s) 42, 191
LweI GCATC 1 cut(s) 303
MaeI CTAG 1 cut(s) 105
MaeII ACGT 1 cut(s) 146
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 5 cut(s) 76, 96, 127, 194, 301
MluCI AATT 4 cut(s) 26, 35, 51, 191
MnlI CCTC 5 cut(s) 16, 91, 112, 244, 252
MroXI GAANNNNTTC 1 cut(s) 30
MseI TTAA 3 cut(s) 110, 225, 266
MspCI CTTAAG 1 cut(s) 265
MwoI GCNNNNNNNGC 1 cut(s) 47
NdeII GATC 1 cut(s) 76
NlaIII CATG 1 cut(s) 170
PagI TCATGA 1 cut(s) 166
PceI AGGCCT 1 cut(s) 101
PdmI GAANNNNTTC 1 cut(s) 30
RsaI GTAC 1 cut(s) 204
RsaNI GTAC 1 cut(s) 203
SaqAI TTAA 3 cut(s) 110, 225, 266
Sau3AI GATC 1 cut(s) 76
SetI ASST 7 cut(s) 110, 123, 149, 166, 210, 215, 300
SfaNI GCATC 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
Sse9I AATT 4 cut(s) 26, 35, 51, 191
SseBI AGGCCT 1 cut(s) 101
SspMI CTAG 1 cut(s) 105
StuI AGGCCT 1 cut(s) 101
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 2 cut(s) 202, 230
TaiI ACGT 1 cut(s) 149
TasI AATT 4 cut(s) 26, 35, 51, 191
TatI WGTACW 1 cut(s) 202
Tru1I TTAA 3 cut(s) 110, 225, 266
Tru9I TTAA 3 cut(s) 110, 225, 266
TscAI CASTG 2 cut(s) 144, 243
TspDTI ATGAA 1 cut(s) 275
TspRI CASTG 2 cut(s) 144, 243
Vha464I CTTAAG 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 30
XspI CTAG 1 cut(s) 105
ZraI GACGTC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.