Rh7AG341700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0030523
Physical Location & Seq
Reverse (-)
43202645 .. 43205818
3174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG341700.1

Sequence Viewer

Length: 351 bp
ATGGTCAACAACAGATCCAAAGAAGCCAGCCGATCTCGGCCTTGCTGCTGTGGGGGCTTGTGCAACTGGTACGCCATACACAGGATCTGGAACCGGAACCAAGTGGATGATAGGCTAGCTCTGGAGCAGGACGCTGAAGTTCAGGCGCCAGAAGATTGTCAATCTCATGGAATAGATGATGAGGCCTCTAGGTTAAAGAAGAAGCTTGATGGAAGGACACCACTGCTGACGTCTCCTTCAACTGAAGGTCATGACAAAGTATCGGAAGAAACAAAATTGGAAACAGTACAGGCATTAAAAAAAGCACTTGCACAAATTCGAGCTTGTTCCAGATTAGAAGGCTTTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

116

Amino Acids

13.09

Weight (kDa)

6.81

Isoelectric Point (pI)

50.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0030523)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0221371
rosa_samantha Rh7AG341700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 233
AccB1I GGYRCC 1 cut(s) 145
AclWI GGATC 2 cut(s) 9, 92
AcsI RAATTY 1 cut(s) 315
AcuI CTGAAG 2 cut(s) 156, 264
AcyI GRCGYC 2 cut(s) 146, 230
AfaI GTAC 2 cut(s) 71, 288
AfiI CCNNNNNNNGG 1 cut(s) 81
AgsI TTSAA 1 cut(s) 240
AluBI AGCT 3 cut(s) 119, 205, 323
AluI AGCT 3 cut(s) 119, 205, 323
Alw26I GTCTC 1 cut(s) 237
AlwI GGATC 2 cut(s) 9, 92
AlwNI CAGNNNCTG 1 cut(s) 87
AoxI GGCC 2 cut(s) 38, 183
ApeKI GCWGC 1 cut(s) 45
ApoI RAATTY 1 cut(s) 315
AspLEI GCGC 1 cut(s) 148
AsuNHI GCTAGC 1 cut(s) 115
BanI GGYRCC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 32
BccI CCATC 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 2 cut(s) 116, 189
BfoI RGCGCY 1 cut(s) 149
BisI GCNGC 1 cut(s) 46
BlsI GCNGC 1 cut(s) 47
BmiI GGNNCC 3 cut(s) 92, 98, 147
BmtI GCTAGC 1 cut(s) 119
BpmI CTGGAG 1 cut(s) 143
BsaHI GRCGYC 2 cut(s) 146, 230
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse1I ACTGG 1 cut(s) 71
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 32
BshFI GGCC 2 cut(s) 40, 185
BshNI GGYRCC 1 cut(s) 145
BsiSI CCGG 1 cut(s) 94
BslI CCNNNNNNNGG 1 cut(s) 81
BsmAI GTCTC 1 cut(s) 237
BsmBI CGTCTC 1 cut(s) 237
BsnI GGCC 2 cut(s) 40, 185
Bsp143I GATC 3 cut(s) 14, 32, 84
BspANI GGCC 2 cut(s) 40, 185
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 3 cut(s) 92, 98, 147
BspOI GCTAGC 1 cut(s) 119
BspPI GGATC 2 cut(s) 9, 92
BspT107I GGYRCC 1 cut(s) 145
BsrI ACTGG 1 cut(s) 71
BssMI GATC 3 cut(s) 14, 32, 84
BssNI GRCGYC 2 cut(s) 146, 230
Bst4CI ACNGT 1 cut(s) 286
BstACI GRCGYC 2 cut(s) 146, 230
BstC8I GCNNGC 2 cut(s) 28, 117
BstF5I GGATG 1 cut(s) 112
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 3 cut(s) 17, 35, 87
BstMAI GTCTC 1 cut(s) 237
BstMBI GATC 3 cut(s) 14, 32, 84
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 32
BstX2I RGATCY 2 cut(s) 14, 84
BstYI RGATCY 2 cut(s) 14, 84
BsuRI GGCC 2 cut(s) 40, 185
BtsCI GGATG 1 cut(s) 112
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 221
Cac8I GCNNGC 2 cut(s) 28, 117
CaiI CAGNNNCTG 1 cut(s) 87
CciI TCATGA 1 cut(s) 250
CfoI GCGC 1 cut(s) 148
CseI GACGC 1 cut(s) 140
Csp6I GTAC 2 cut(s) 70, 287
CviAII CATG 2 cut(s) 167, 251
CviQI GTAC 2 cut(s) 70, 287
DinI GGCGCC 1 cut(s) 147
DpnI GATC 3 cut(s) 16, 34, 86
DpnII GATC 3 cut(s) 14, 32, 84
Eco147I AGGCCT 1 cut(s) 185
Eco57I CTGAAG 2 cut(s) 156, 264
EgeI GGCGCC 1 cut(s) 147
EheI GGCGCC 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 2 cut(s) 170, 254
FaiI YATR 3 cut(s) 77, 168, 252
FatI CATG 2 cut(s) 166, 250
Fnu4HI GCNGC 1 cut(s) 46
FokI GGATG 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 46
FspBI CTAG 2 cut(s) 116, 189
GlaI GCGC 1 cut(s) 147
GluI GCNGC 1 cut(s) 46
GsuI CTGGAG 1 cut(s) 143
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 2 cut(s) 40, 185
HapII CCGG 1 cut(s) 94
HgaI GACGC 1 cut(s) 140
HhaI GCGC 1 cut(s) 148
Hin1I GRCGYC 2 cut(s) 146, 230
Hin1II CATG 2 cut(s) 170, 254
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HindIII AAGCTT 1 cut(s) 203
HpaII CCGG 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 1 cut(s) 265
Hpy188III TCNNGA 4 cut(s) 88, 122, 251, 330
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 4 cut(s) 207, 239, 246, 332
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 2 cut(s) 63, 311
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 230
Hsp92I GRCGYC 2 cut(s) 146, 230
Hsp92II CATG 2 cut(s) 170, 254
HspAI GCGC 1 cut(s) 146
KasI GGCGCC 1 cut(s) 145
Kzo9I GATC 3 cut(s) 14, 32, 84
LmnI GCTCC 1 cut(s) 124
Lsp1109I GCAGC 1 cut(s) 32
MaeI CTAG 2 cut(s) 116, 189
MaeII ACGT 1 cut(s) 230
MalI GATC 3 cut(s) 16, 34, 86
MboI GATC 3 cut(s) 14, 32, 84
MboII GAAGA 3 cut(s) 164, 211, 278
MflI RGATCY 2 cut(s) 14, 84
MluCI AATT 2 cut(s) 275, 315
Mly113I GGCGCC 1 cut(s) 146
MnlI CCTC 2 cut(s) 175, 196
MseI TTAA 2 cut(s) 194, 296
MspI CCGG 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 54
NarI GGCGCC 1 cut(s) 146
NdeII GATC 3 cut(s) 14, 32, 84
NheI GCTAGC 1 cut(s) 115
NlaIII CATG 2 cut(s) 170, 254
NlaIV GGNNCC 3 cut(s) 92, 98, 147
NmeAIII GCCGAG 1 cut(s) 16
PagI TCATGA 1 cut(s) 250
PceI AGGCCT 1 cut(s) 185
PkrI GCNGC 1 cut(s) 47
PluTI GGCGCC 1 cut(s) 149
PspN4I GGNNCC 3 cut(s) 92, 98, 147
PstNI CAGNNNCTG 1 cut(s) 87
PsuI RGATCY 2 cut(s) 14, 84
RsaI GTAC 2 cut(s) 71, 288
RsaNI GTAC 2 cut(s) 70, 287
SaqAI TTAA 2 cut(s) 194, 296
SatI GCNGC 1 cut(s) 46
Sau3AI GATC 3 cut(s) 14, 32, 84
SetI ASST 6 cut(s) 121, 194, 207, 233, 250, 325
SfoI GGCGCC 1 cut(s) 147
Sse9I AATT 2 cut(s) 275, 315
SseBI AGGCCT 1 cut(s) 185
SspDI GGCGCC 1 cut(s) 145
SspMI CTAG 2 cut(s) 116, 189
StuI AGGCCT 1 cut(s) 185
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 1 cut(s) 233
TaqI TCGA 1 cut(s) 319
TasI AATT 2 cut(s) 275, 315
TatI WGTACW 1 cut(s) 286
Tru1I TTAA 2 cut(s) 194, 296
Tru9I TTAA 2 cut(s) 194, 296
TscAI CASTG 1 cut(s) 228
TseI GCWGC 1 cut(s) 45
TspRI CASTG 1 cut(s) 228
XapI RAATTY 1 cut(s) 315
XspI CTAG 2 cut(s) 116, 189
ZraI GACGTC 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.