Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0030457

Physical Location & Seq

Genomic Coordinates Reverse (-)

42999376 .. 43002164

Gene Structure 2789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19856

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGAACTTGCTTTCGAAAGCGATTCTGAGTGAGGGAAGCCTCATTTTTGCACTCATGGCGTATCGGCACGTGGTTGCGGCCATTTGTGTTGCTTTGCGCTCTGTTTGGAAAGATCAAGGAACAGAAGCTAGGTTGGTTAGTTTGGTTCTGGCTATTGACTGGGGCTTCACTATTCTGTACAGACTAATGGTAGATGCATACCTAAAGATTAATTGGGGCTGCTGGTACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005887 GO:0005938 GO:0007154 GO:0007165 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0016020 GO:0016021 GO:0023052 GO:0031224 GO:0031226 GO:0032870 GO:0042221 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071944 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EamA

Protein Analysis

77

Amino Acids

8.76

Weight (kDa)

8.55

Isoelectric Point (pI)

20.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0030457)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0221901 RchiOBHm_Chr7g0227821

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	77
AcoI	YGGCCR	1 cut(s)	78
AcvI	CACGTG	1 cut(s)	70
AfaI	GTAC	2 cut(s)	179, 227
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	219
AseI	ATTAAT	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	99
AsuII	TTCGAA	1 cut(s)	14
BbrPI	CACGTG	1 cut(s)	70
BbvI	GCAGC	1 cut(s)	206
BfaI	CTAG	1 cut(s)	129
BisI	GCNGC	2 cut(s)	78, 220
BlsI	GCNGC	2 cut(s)	79, 221
BmrI	ACTGGG	1 cut(s)	169
BmsI	GCATC	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	169
Bpu14I	TTCGAA	1 cut(s)	14
BsaAI	YACGTR	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	17
BseNI	ACTGG	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	206
BshFI	GGCC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	80
Bsp119I	TTCGAA	1 cut(s)	14
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	1 cut(s)	77
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	1 cut(s)	18
BspT104I	TTCGAA	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	164
BssMI	GATC	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	230
BstAUI	TGTACA	1 cut(s)	177
BstBAI	YACGTR	1 cut(s)	70
BstBI	TTCGAA	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstV1I	GCAGC	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	80
CfoI	GCGC	1 cut(s)	99
Csp6I	GTAC	2 cut(s)	178, 226
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	6 cut(s)	39, 80, 128, 152, 165, 219
CviKI_1	RGCY	6 cut(s)	39, 80, 128, 152, 165, 219
CviQI	GTAC	2 cut(s)	178, 226
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	78
Eco72I	CACGTG	1 cut(s)	70
EcoT22I	ATGCAT	1 cut(s)	199
FaeI	CATG	1 cut(s)	58
FaiI	YATR	2 cut(s)	56, 199
FatI	CATG	1 cut(s)	54
Fnu4HI	GCNGC	2 cut(s)	78, 220
Fsp4HI	GCNGC	2 cut(s)	78, 220
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	2 cut(s)	78, 220
HaeIII	GGCC	1 cut(s)	80
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	1 cut(s)	58
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HinfI	GANTC	1 cut(s)	22
Hpy188I	TCNGA	1 cut(s)	27
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	1 cut(s)	69
HpyCH4V	TGCA	2 cut(s)	50, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	1 cut(s)	26
HpySE526I	ACGT	1 cut(s)	69
Hsp92II	CATG	1 cut(s)	58
HspAI	GCGC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	112
LpnPI	CCDG	3 cut(s)	134, 145, 208
Lsp1109I	GCAGC	1 cut(s)	206
LweI	GCATC	1 cut(s)	184
MaeI	CTAG	1 cut(s)	129
MaeII	ACGT	1 cut(s)	69
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MluCI	AATT	1 cut(s)	211
MnlI	CCTC	2 cut(s)	25, 50
Mph1103I	ATGCAT	1 cut(s)	199
MseI	TTAA	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	56
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	1 cut(s)	58
NsiI	ATGCAT	1 cut(s)	199
NspV	TTCGAA	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	22
PkrI	GCNGC	2 cut(s)	79, 221
PmaCI	CACGTG	1 cut(s)	70
PmlI	CACGTG	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	70
PshBI	ATTAAT	1 cut(s)	210
PspCI	CACGTG	1 cut(s)	70
RsaI	GTAC	2 cut(s)	179, 227
RsaNI	GTAC	2 cut(s)	178, 226
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	2 cut(s)	78, 220
Sau3AI	GATC	1 cut(s)	112
SetI	ASST	4 cut(s)	72, 130, 134, 204
SfaNI	GCATC	1 cut(s)	184
SfuI	TTCGAA	1 cut(s)	14
SgeI	CNNG	8 cut(s)	19, 67, 80, 82, 128, 141, 161, 172
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	1 cut(s)	77
SspMI	CTAG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	1 cut(s)	72
TaqI	TCGA	1 cut(s)	14
TasI	AATT	1 cut(s)	211
TatI	WGTACW	1 cut(s)	177
TauI	GCSGC	1 cut(s)	80
TfiI	GAWTC	1 cut(s)	22
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TseI	GCWGC	1 cut(s)	219
TspDTI	ATGAA	1 cut(s)	17
VspI	ATTAAT	1 cut(s)	210
XspI	CTAG	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.