Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022747

Physical Location & Seq

Genomic Coordinates Reverse (-)

47147938 .. 47164751

Gene Structure 16814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20130

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

ATGCTTGCACATGGATTAGTTGCCACACACAGTGTACAATTGTTGACTGCAAAGAGTTTACCTTATGGATTTGGGAATTCTGATGCTAGCGTGGTTTTACTTGGGACTACAACCTCCATGGCAGCTGCTAGTGCTTGTTTCTTATACATTCTTAGCACACAGTTTTCAAGAACTTCGTGCTTCGTATTGTTTGTGATCGGCTTTCCTTTCCTTCAGCTTATTTCATCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003955 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0010207 GO:0015979 GO:0016043 GO:0016491 GO:0016651 GO:0016655 GO:0019684 GO:0022607 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0055114 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

VKOR

Protein Analysis

77

Amino Acids

8.13

Weight (kDa)

7.85

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0022747)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0418411 RchiOBHm_Chr7g0224811
rosa_samantha	Rh2BG517900 Rh2DG529600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	76
AcuI	CTGAAG	1 cut(s)	197
AdeI	CACNNNGTG	1 cut(s)	32
AfaI	GTAC	1 cut(s)	36
AgsI	TTSAA	1 cut(s)	168
AluBI	AGCT	2 cut(s)	125, 217
AluI	AGCT	2 cut(s)	125, 217
ApeKI	GCWGC	2 cut(s)	122, 125
ApoI	RAATTY	1 cut(s)	76
AsuNHI	GCTAGC	1 cut(s)	86
BbvI	GCAGC	2 cut(s)	112, 134
BfaI	CTAG	2 cut(s)	87, 129
BisI	GCNGC	2 cut(s)	123, 126
BlsI	GCNGC	2 cut(s)	124, 127
BmsI	GCATC	1 cut(s)	73
BmtI	GCTAGC	1 cut(s)	90
BsaJI	CCNNGG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	117
BseXI	GCAGC	2 cut(s)	112, 134
BslFI	GGGAC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	118
Bsp1407I	TGTACA	1 cut(s)	34
Bsp143I	GATC	1 cut(s)	195
Bsp19I	CCATGG	1 cut(s)	117
BspOI	GCTAGC	1 cut(s)	90
BsrGI	TGTACA	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	117
Bst4CI	ACNGT	2 cut(s)	32, 162
BstAUI	TGTACA	1 cut(s)	34
BstC8I	GCNNGC	2 cut(s)	6, 88
BstDEI	CTNAG	1 cut(s)	152
BstDSI	CCRYGG	1 cut(s)	117
BstKTI	GATC	1 cut(s)	198
BstMBI	GATC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstV1I	GCAGC	2 cut(s)	112, 134
BtgI	CCRYGG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	37
Cac8I	GCNNGC	2 cut(s)	6, 88
Csp6I	GTAC	1 cut(s)	35
CviAII	CATG	2 cut(s)	11, 118
CviJI	RGCY	3 cut(s)	125, 201, 217
CviKI_1	RGCY	3 cut(s)	125, 201, 217
CviQI	GTAC	1 cut(s)	35
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	1 cut(s)	197
DpnII	GATC	1 cut(s)	195
DraIII	CACNNNGTG	1 cut(s)	32
Eco130I	CCWWGG	1 cut(s)	117
Eco57I	CTGAAG	1 cut(s)	197
EcoRI	GAATTC	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	2 cut(s)	14, 121
FaiI	YATR	4 cut(s)	12, 66, 119, 145
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	2 cut(s)	10, 117
Fnu4HI	GCNGC	2 cut(s)	123, 126
Fsp4HI	GCNGC	2 cut(s)	123, 126
FspBI	CTAG	2 cut(s)	87, 129
GluI	GCNGC	2 cut(s)	123, 126
Hin1II	CATG	2 cut(s)	14, 121
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
Hpy166II	GTNNAC	3 cut(s)	35, 45, 59
Hpy188I	TCNGA	1 cut(s)	82
Hpy188III	TCNNGA	1 cut(s)	168
Hpy8I	GTNNAC	3 cut(s)	35, 45, 59
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	2 cut(s)	32, 162
HpyCH4V	TGCA	2 cut(s)	8, 50
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	152
Hsp92II	CATG	2 cut(s)	14, 121
Kzo9I	GATC	1 cut(s)	195
Lsp1109I	GCAGC	2 cut(s)	112, 134
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	2 cut(s)	87, 129
MalI	GATC	1 cut(s)	197
MboI	GATC	1 cut(s)	195
MfeI	CAATTG	1 cut(s)	38
MluCI	AATT	2 cut(s)	38, 76
MnlI	CCTC	1 cut(s)	124
MseI	TTAA	1 cut(s)	232
MspA1I	CMGCKG	1 cut(s)	125
MunI	CAATTG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	131
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	1 cut(s)	195
NheI	GCTAGC	1 cut(s)	86
NlaIII	CATG	2 cut(s)	14, 121
PkrI	GCNGC	2 cut(s)	124, 127
PvuII	CAGCTG	1 cut(s)	125
RsaI	GTAC	1 cut(s)	36
RsaNI	GTAC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	232
SatI	GCNGC	2 cut(s)	123, 126
Sau3AI	GATC	1 cut(s)	195
SetI	ASST	4 cut(s)	64, 116, 127, 219
SfaNI	GCATC	1 cut(s)	73
Sse9I	AATT	2 cut(s)	38, 76
SspMI	CTAG	2 cut(s)	87, 129
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	2 cut(s)	32, 162
TasI	AATT	2 cut(s)	38, 76
TatI	WGTACW	1 cut(s)	34
Tru1I	TTAA	1 cut(s)	232
Tru9I	TTAA	1 cut(s)	232
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	2 cut(s)	122, 125
TspDTI	ATGAA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	37
XapI	RAATTY	1 cut(s)	76
XspI	CTAG	2 cut(s)	87, 129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.