Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0029852

Physical Location & Seq

Genomic Coordinates Reverse (-)

48558924 .. 48559528

Gene Structure 605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20216

Sequence Viewer

CDS Protein Promoter (2k)

Length: 129 bp

ATGCTCAAAGATGAGAGGCTGGTGCAGCATCAACCTACGCAATATCCCACATCCGAGGAGTTGAGAATTGGCAAAATCAAGTTCAAGGCCTTTGATTTGGGAGGTCATCAGATTGCTTGCAGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

42

Amino Acids

4.88

Weight (kDa)

9.03

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Arf	PF00025	1 - 39	1.6e-08	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029852)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0145331 RchiOBHm_Chr7g0225711

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	85
AlwNI	CAGNNNCTG	1 cut(s)	126
AoxI	GGCC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	37
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
BmsI	GCATC	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	54
BseGI	GGATG	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	44
BshFI	GGCC	1 cut(s)	89
BsnI	GGCC	1 cut(s)	89
BspANI	GGCC	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	118
BstF5I	GGATG	1 cut(s)	50
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	50
Cac8I	GCNNGC	1 cut(s)	118
CaiI	CAGNNNCTG	1 cut(s)	126
CviJI	RGCY	2 cut(s)	19, 89
CviKI_1	RGCY	2 cut(s)	19, 89
Eco147I	AGGCCT	1 cut(s)	89
Fnu4HI	GCNGC	1 cut(s)	26
FokI	GGATG	1 cut(s)	37
Fsp4HI	GCNGC	1 cut(s)	26
GluI	GCNGC	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	89
Hpy188I	TCNGA	3 cut(s)	55, 111, 128
HpyCH4V	TGCA	2 cut(s)	25, 120
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
LpnPI	CCDG	2 cut(s)	5, 106
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	37
MluCI	AATT	1 cut(s)	66
MnlI	CCTC	3 cut(s)	9, 49, 95
MwoI	GCNNNNNNNGC	1 cut(s)	25
PceI	AGGCCT	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	27
PstNI	CAGNNNCTG	1 cut(s)	126
SatI	GCNGC	1 cut(s)	26
SetI	ASST	2 cut(s)	37, 106
SfaNI	GCATC	1 cut(s)	37
SgeI	CNNG	4 cut(s)	32, 67, 91, 97
Sse9I	AATT	1 cut(s)	66
SseBI	AGGCCT	1 cut(s)	89
StuI	AGGCCT	1 cut(s)	89
TasI	AATT	1 cut(s)	66
TseI	GCWGC	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.