RchiOBHm_Chr7g0227071

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Reverse (-)
50424804 .. 50427415
2612 bp
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UTR
Exon/CDS
Intron
PRQ20335

Sequence Viewer

Length: 168 bp
ATGTGCCATGCGAATATTGACTTGACAACAGTTGTCCTAAAAGTTAACAATGGAGTAGTTTCCACAATGATACACAAACAGGGAAAGCTCTTGAGTTGTGGCTCAAAAACTGAAGGAGGCAGAAATTACCGAGCAAGACTCCCTTCTGGTTCCACTTTCCTCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

55

Amino Acids

5.95

Weight (kDa)

9.9

Isoelectric Point (pI)

45.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025118)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 132
AluBI AGCT 1 cut(s) 88
AluI AGCT 1 cut(s) 88
BfaI CTAG 1 cut(s) 166
BmiI GGNNCC 1 cut(s) 151
BplI GAGNNNNNCTC 2 cut(s) 123, 155
BpuEI CTTGAG 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 151
Bst4CI ACNGT 1 cut(s) 31
CviAII CATG 1 cut(s) 8
CviJI RGCY 2 cut(s) 88, 102
CviKI_1 RGCY 2 cut(s) 88, 102
Eco57I CTGAAG 1 cut(s) 132
FaeI CATG 1 cut(s) 11
FaiI YATR 1 cut(s) 9
FalI AAGNNNNNCTT 2 cut(s) 127, 159
FatI CATG 1 cut(s) 7
FspBI CTAG 1 cut(s) 166
Hin1II CATG 1 cut(s) 11
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 1 cut(s) 138
HpaI GTTAAC 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 91
Hpy8I GTNNAC 1 cut(s) 46
HpyAV CCTTC 2 cut(s) 107, 153
HpyCH4III ACNGT 1 cut(s) 31
Hsp92II CATG 1 cut(s) 11
KspAI GTTAAC 1 cut(s) 46
LpnPI CCDG 2 cut(s) 65, 132
MaeI CTAG 1 cut(s) 166
MboII GAAGA 1 cut(s) 154
MluCI AATT 1 cut(s) 124
MlyI GAGTC 1 cut(s) 132
MnlI CCTC 1 cut(s) 110
MseI TTAA 1 cut(s) 45
NlaIII CATG 1 cut(s) 11
NlaIV GGNNCC 1 cut(s) 151
PleI GAGTC 1 cut(s) 132
PpsI GAGTC 1 cut(s) 132
PspN4I GGNNCC 1 cut(s) 151
SaqAI TTAA 1 cut(s) 45
SchI GAGTC 1 cut(s) 132
SetI ASST 1 cut(s) 90
SgeI CNNG 7 cut(s) 20, 34, 92, 103, 143, 147, 159
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
Sse9I AATT 1 cut(s) 124
SspI AATATT 1 cut(s) 16
SspMI CTAG 1 cut(s) 166
TaaI ACNGT 1 cut(s) 31
TasI AATT 1 cut(s) 124
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
XspI CTAG 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.